Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS06300

Experiment: Tuber-Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS06290 and HER17_RS06295 are separated by 53 nucleotidesHER17_RS06295 and HER17_RS06300 are separated by 21 nucleotidesHER17_RS06300 and HER17_RS06305 are separated by 25 nucleotides HER17_RS06290: HER17_RS06290 - GNAT family N-acetyltransferase, at 1,393,370 to 1,393,921 _RS06290 HER17_RS06295: HER17_RS06295 - Vat family streptogramin A O-acetyltransferase, at 1,393,975 to 1,394,628 _RS06295 HER17_RS06300: HER17_RS06300 - two-component system response regulator BaeR, at 1,394,650 to 1,395,378 _RS06300 HER17_RS06305: HER17_RS06305 - two-component system sensor histidine kinase BaeS, at 1,395,404 to 1,396,771 _RS06305 Position (kb) 1394 1395 1396Strain fitness (log2 ratio) -2 -1 0 1 2at 1393.825 kb on + strand, within HER17_RS06290at 1393.826 kb on - strand, within HER17_RS06290at 1393.826 kb on - strand, within HER17_RS06290at 1393.977 kb on - strandat 1393.977 kb on - strandat 1394.000 kb on - strandat 1394.152 kb on - strand, within HER17_RS06295at 1394.154 kb on - strand, within HER17_RS06295at 1394.240 kb on + strand, within HER17_RS06295at 1394.240 kb on + strand, within HER17_RS06295at 1394.241 kb on - strand, within HER17_RS06295at 1394.283 kb on - strand, within HER17_RS06295at 1394.283 kb on - strand, within HER17_RS06295at 1394.349 kb on + strand, within HER17_RS06295at 1394.350 kb on - strand, within HER17_RS06295at 1394.409 kb on + strand, within HER17_RS06295at 1394.437 kb on - strand, within HER17_RS06295at 1394.459 kb on + strand, within HER17_RS06295at 1394.460 kb on - strand, within HER17_RS06295at 1394.460 kb on - strand, within HER17_RS06295at 1394.460 kb on - strand, within HER17_RS06295at 1394.504 kb on + strand, within HER17_RS06295at 1394.505 kb on - strand, within HER17_RS06295at 1394.505 kb on - strand, within HER17_RS06295at 1394.507 kb on + strand, within HER17_RS06295at 1394.507 kb on + strand, within HER17_RS06295at 1394.507 kb on + strand, within HER17_RS06295at 1394.508 kb on - strand, within HER17_RS06295at 1394.508 kb on - strand, within HER17_RS06295at 1394.508 kb on - strand, within HER17_RS06295at 1394.508 kb on - strand, within HER17_RS06295at 1394.513 kb on + strand, within HER17_RS06295at 1394.513 kb on + strand, within HER17_RS06295at 1394.514 kb on - strand, within HER17_RS06295at 1394.514 kb on - strand, within HER17_RS06295at 1394.514 kb on - strand, within HER17_RS06295at 1394.636 kb on + strandat 1394.653 kb on + strandat 1394.653 kb on + strandat 1394.653 kb on + strandat 1394.653 kb on + strandat 1394.654 kb on - strandat 1394.654 kb on - strandat 1394.654 kb on - strandat 1394.662 kb on - strandat 1394.662 kb on - strandat 1394.709 kb on + strandat 1394.710 kb on - strandat 1394.811 kb on + strand, within HER17_RS06300at 1394.812 kb on - strand, within HER17_RS06300at 1394.912 kb on + strand, within HER17_RS06300at 1394.935 kb on - strand, within HER17_RS06300at 1395.051 kb on + strand, within HER17_RS06300at 1395.057 kb on + strand, within HER17_RS06300at 1395.057 kb on + strand, within HER17_RS06300at 1395.057 kb on + strand, within HER17_RS06300at 1395.057 kb on + strand, within HER17_RS06300at 1395.057 kb on + strand, within HER17_RS06300at 1395.057 kb on + strand, within HER17_RS06300at 1395.058 kb on - strand, within HER17_RS06300at 1395.058 kb on - strand, within HER17_RS06300at 1395.058 kb on - strand, within HER17_RS06300at 1395.058 kb on - strand, within HER17_RS06300at 1395.058 kb on - strand, within HER17_RS06300at 1395.058 kb on - strand, within HER17_RS06300at 1395.058 kb on - strand, within HER17_RS06300at 1395.058 kb on - strand, within HER17_RS06300at 1395.060 kb on - strand, within HER17_RS06300at 1395.127 kb on - strand, within HER17_RS06300at 1395.127 kb on - strand, within HER17_RS06300at 1395.193 kb on + strand, within HER17_RS06300at 1395.194 kb on - strand, within HER17_RS06300at 1395.194 kb on - strand, within HER17_RS06300at 1395.194 kb on - strand, within HER17_RS06300at 1395.267 kb on - strand, within HER17_RS06300at 1395.275 kb on + strand, within HER17_RS06300at 1395.275 kb on + strand, within HER17_RS06300at 1395.275 kb on + strand, within HER17_RS06300at 1395.275 kb on + strand, within HER17_RS06300at 1395.276 kb on - strand, within HER17_RS06300at 1395.293 kb on + strand, within HER17_RS06300at 1395.294 kb on - strand, within HER17_RS06300at 1395.378 kb on + strandat 1395.378 kb on + strandat 1395.378 kb on + strandat 1395.378 kb on + strandat 1395.379 kb on - strandat 1395.379 kb on - strandat 1395.379 kb on - strandat 1395.392 kb on + strandat 1395.392 kb on + strandat 1395.392 kb on + strandat 1395.393 kb on - strandat 1395.405 kb on + strandat 1395.406 kb on - strandat 1395.437 kb on - strandat 1395.437 kb on - strandat 1395.471 kb on + strandat 1395.471 kb on + strandat 1395.472 kb on - strandat 1395.472 kb on - strandat 1395.472 kb on - strandat 1395.472 kb on - strandat 1395.502 kb on + strandat 1395.502 kb on + strandat 1395.503 kb on - strandat 1395.568 kb on - strand, within HER17_RS06305at 1395.646 kb on + strand, within HER17_RS06305at 1395.646 kb on + strand, within HER17_RS06305at 1395.647 kb on - strand, within HER17_RS06305at 1395.647 kb on - strand, within HER17_RS06305at 1395.718 kb on + strand, within HER17_RS06305at 1395.722 kb on - strand, within HER17_RS06305at 1395.722 kb on - strand, within HER17_RS06305at 1395.722 kb on - strand, within HER17_RS06305at 1395.722 kb on - strand, within HER17_RS06305at 1395.725 kb on + strand, within HER17_RS06305at 1395.726 kb on - strand, within HER17_RS06305at 1395.726 kb on - strand, within HER17_RS06305at 1395.790 kb on + strand, within HER17_RS06305at 1395.790 kb on + strand, within HER17_RS06305at 1395.835 kb on + strand, within HER17_RS06305at 1395.835 kb on + strand, within HER17_RS06305at 1395.836 kb on - strand, within HER17_RS06305at 1395.901 kb on + strand, within HER17_RS06305at 1395.901 kb on + strand, within HER17_RS06305at 1395.901 kb on + strand, within HER17_RS06305at 1395.923 kb on + strand, within HER17_RS06305at 1395.924 kb on - strand, within HER17_RS06305at 1395.924 kb on - strand, within HER17_RS06305at 1396.273 kb on + strand, within HER17_RS06305at 1396.274 kb on - strand, within HER17_RS06305

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Per-strain Table

Position Strand Gene LocusTag Fraction Tuber-Atlantic
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1,393,825 + HER17_RS06290 0.82 -1.3
1,393,826 - HER17_RS06290 0.83 +1.5
1,393,826 - HER17_RS06290 0.83 +1.1
1,393,977 - +1.6
1,393,977 - +1.9
1,394,000 - +0.2
1,394,152 - HER17_RS06295 0.27 +1.4
1,394,154 - HER17_RS06295 0.27 +0.4
1,394,240 + HER17_RS06295 0.41 -0.5
1,394,240 + HER17_RS06295 0.41 -0.3
1,394,241 - HER17_RS06295 0.41 +1.0
1,394,283 - HER17_RS06295 0.47 -0.1
1,394,283 - HER17_RS06295 0.47 +0.9
1,394,349 + HER17_RS06295 0.57 +0.3
1,394,350 - HER17_RS06295 0.57 -0.7
1,394,409 + HER17_RS06295 0.66 +0.1
1,394,437 - HER17_RS06295 0.71 +1.2
1,394,459 + HER17_RS06295 0.74 -0.9
1,394,460 - HER17_RS06295 0.74 +1.2
1,394,460 - HER17_RS06295 0.74 -0.9
1,394,460 - HER17_RS06295 0.74 +1.2
1,394,504 + HER17_RS06295 0.81 +1.7
1,394,505 - HER17_RS06295 0.81 +0.5
1,394,505 - HER17_RS06295 0.81 -0.5
1,394,507 + HER17_RS06295 0.81 +0.2
1,394,507 + HER17_RS06295 0.81 -0.1
1,394,507 + HER17_RS06295 0.81 -1.2
1,394,508 - HER17_RS06295 0.81 -1.3
1,394,508 - HER17_RS06295 0.81 -1.3
1,394,508 - HER17_RS06295 0.81 +0.8
1,394,508 - HER17_RS06295 0.81 -1.5
1,394,513 + HER17_RS06295 0.82 -0.0
1,394,513 + HER17_RS06295 0.82 -0.1
1,394,514 - HER17_RS06295 0.82 +0.2
1,394,514 - HER17_RS06295 0.82 -0.9
1,394,514 - HER17_RS06295 0.82 +2.2
1,394,636 + -0.2
1,394,653 + -0.5
1,394,653 + -0.6
1,394,653 + -0.9
1,394,653 + +1.1
1,394,654 - -0.1
1,394,654 - -0.3
1,394,654 - -0.7
1,394,662 - -0.5
1,394,662 - -0.6
1,394,709 + +1.0
1,394,710 - +1.0
1,394,811 + HER17_RS06300 0.22 -0.5
1,394,812 - HER17_RS06300 0.22 +0.6
1,394,912 + HER17_RS06300 0.36 -1.2
1,394,935 - HER17_RS06300 0.39 +1.0
1,395,051 + HER17_RS06300 0.55 -1.5
1,395,057 + HER17_RS06300 0.56 +0.4
1,395,057 + HER17_RS06300 0.56 +1.4
1,395,057 + HER17_RS06300 0.56 +0.0
1,395,057 + HER17_RS06300 0.56 +1.2
1,395,057 + HER17_RS06300 0.56 +0.9
1,395,057 + HER17_RS06300 0.56 -0.4
1,395,058 - HER17_RS06300 0.56 -0.3
1,395,058 - HER17_RS06300 0.56 +0.3
1,395,058 - HER17_RS06300 0.56 -0.2
1,395,058 - HER17_RS06300 0.56 +0.3
1,395,058 - HER17_RS06300 0.56 -0.9
1,395,058 - HER17_RS06300 0.56 +0.7
1,395,058 - HER17_RS06300 0.56 -1.2
1,395,058 - HER17_RS06300 0.56 +1.0
1,395,060 - HER17_RS06300 0.56 -1.3
1,395,127 - HER17_RS06300 0.65 -1.4
1,395,127 - HER17_RS06300 0.65 -2.2
1,395,193 + HER17_RS06300 0.74 +0.4
1,395,194 - HER17_RS06300 0.75 -0.3
1,395,194 - HER17_RS06300 0.75 +0.1
1,395,194 - HER17_RS06300 0.75 +0.3
1,395,267 - HER17_RS06300 0.85 +0.4
1,395,275 + HER17_RS06300 0.86 +0.4
1,395,275 + HER17_RS06300 0.86 -0.4
1,395,275 + HER17_RS06300 0.86 -0.5
1,395,275 + HER17_RS06300 0.86 -1.8
1,395,276 - HER17_RS06300 0.86 -1.8
1,395,293 + HER17_RS06300 0.88 -0.1
1,395,294 - HER17_RS06300 0.88 +1.3
1,395,378 + -1.0
1,395,378 + -2.0
1,395,378 + -0.4
1,395,378 + -0.2
1,395,379 - -0.5
1,395,379 - -0.1
1,395,379 - -0.9
1,395,392 + -1.7
1,395,392 + -1.0
1,395,392 + -0.1
1,395,393 - -1.3
1,395,405 + +0.0
1,395,406 - +0.7
1,395,437 - -0.3
1,395,437 - +1.3
1,395,471 + +0.1
1,395,471 + -0.5
1,395,472 - +1.1
1,395,472 - +0.3
1,395,472 - +1.0
1,395,472 - -0.3
1,395,502 + +0.0
1,395,502 + +1.5
1,395,503 - +1.4
1,395,568 - HER17_RS06305 0.12 -0.3
1,395,646 + HER17_RS06305 0.18 -1.1
1,395,646 + HER17_RS06305 0.18 -2.3
1,395,647 - HER17_RS06305 0.18 +0.9
1,395,647 - HER17_RS06305 0.18 -2.3
1,395,718 + HER17_RS06305 0.23 +0.0
1,395,722 - HER17_RS06305 0.23 +1.0
1,395,722 - HER17_RS06305 0.23 +0.6
1,395,722 - HER17_RS06305 0.23 +0.0
1,395,722 - HER17_RS06305 0.23 +1.0
1,395,725 + HER17_RS06305 0.23 +0.9
1,395,726 - HER17_RS06305 0.24 +1.6
1,395,726 - HER17_RS06305 0.24 +1.3
1,395,790 + HER17_RS06305 0.28 +0.7
1,395,790 + HER17_RS06305 0.28 +0.6
1,395,835 + HER17_RS06305 0.32 -1.1
1,395,835 + HER17_RS06305 0.32 +1.3
1,395,836 - HER17_RS06305 0.32 +0.9
1,395,901 + HER17_RS06305 0.36 +0.4
1,395,901 + HER17_RS06305 0.36 -0.3
1,395,901 + HER17_RS06305 0.36 +0.3
1,395,923 + HER17_RS06305 0.38 +1.2
1,395,924 - HER17_RS06305 0.38 +1.7
1,395,924 - HER17_RS06305 0.38 +1.2
1,396,273 + HER17_RS06305 0.64 +1.8
1,396,274 - HER17_RS06305 0.64 -2.1

Or see this region's nucleotide sequence