Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS05615

Experiment: Tuber-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tuber-Atlantic
1,237,013	+				-0.0
1,237,102	+				+0.4
1,237,102	+				+1.1
1,237,102	+				+0.4
1,237,119	+				+0.5
1,237,247	+		HER17_RS05610	0.23	+0.1
1,237,247	+		HER17_RS05610	0.23	+0.8
1,237,247	+		HER17_RS05610	0.23	-1.5
1,237,247	+		HER17_RS05610	0.23	+0.4
1,237,247	+		HER17_RS05610	0.23	+1.7
1,237,248	-		HER17_RS05610	0.23	+0.1
1,237,248	-		HER17_RS05610	0.23	-2.5
1,237,248	-		HER17_RS05610	0.23	-0.7
1,237,248	-		HER17_RS05610	0.23	-0.2
1,237,248	-		HER17_RS05610	0.23	+1.6
1,237,251	+		HER17_RS05610	0.24	-0.7
1,237,251	+		HER17_RS05610	0.24	+0.3
1,237,251	+		HER17_RS05610	0.24	+1.4
1,237,251	+		HER17_RS05610	0.24	-0.1
1,237,251	+		HER17_RS05610	0.24	-1.5
1,237,251	+		HER17_RS05610	0.24	+1.4
1,237,252	-		HER17_RS05610	0.24	-0.1
1,237,252	-		HER17_RS05610	0.24	-0.5
1,237,252	-		HER17_RS05610	0.24	+0.5
1,237,252	-		HER17_RS05610	0.24	+0.1
1,237,252	-		HER17_RS05610	0.24	+0.7
1,237,362	+		HER17_RS05610	0.36	-0.2
1,237,375	-		HER17_RS05610	0.37	-1.5
1,237,403	+		HER17_RS05610	0.40	+1.5
1,237,403	+		HER17_RS05610	0.40	-0.4
1,237,404	-		HER17_RS05610	0.40	-0.9
1,237,404	-		HER17_RS05610	0.40	-0.1
1,237,499	+		HER17_RS05610	0.50	+1.6
1,237,500	-		HER17_RS05610	0.50	-0.0
1,237,575	+		HER17_RS05610	0.59	-1.5
1,237,575	+		HER17_RS05610	0.59	-0.2
1,237,670	+		HER17_RS05610	0.69	+0.6
1,237,678	+		HER17_RS05610	0.70	+0.0
1,237,679	-		HER17_RS05610	0.70	+1.0
1,237,679	-		HER17_RS05610	0.70	+0.2
1,237,718	+		HER17_RS05610	0.74	-0.1
1,237,718	+		HER17_RS05610	0.74	+1.3
1,237,765	+		HER17_RS05610	0.79	-1.0
1,237,765	+		HER17_RS05610	0.79	+0.2
1,237,766	-		HER17_RS05610	0.79	-0.5
1,237,766	-		HER17_RS05610	0.79	-0.0
1,237,766	-		HER17_RS05610	0.79	-1.0
1,237,766	-		HER17_RS05610	0.79	-1.0
1,237,766	-		HER17_RS05610	0.79	-1.9
1,237,788	-		HER17_RS05610	0.82	-0.1
1,237,956	+				+0.5
1,237,956	+				-1.2
1,237,956	+				+0.8
1,238,124	+				-0.6
1,238,125	-				-0.1
1,238,146	+				-1.7
1,238,168	+		HER17_RS05615	0.11	+0.6
1,238,168	+		HER17_RS05615	0.11	+0.1
1,238,169	-		HER17_RS05615	0.11	+0.1
1,238,240	+		HER17_RS05615	0.14	-0.5
1,238,423	+		HER17_RS05615	0.23	-0.9
1,238,424	-		HER17_RS05615	0.23	+0.4
1,238,449	+		HER17_RS05615	0.25	+0.5
1,238,449	+		HER17_RS05615	0.25	-1.7
1,238,455	-		HER17_RS05615	0.25	-1.5
1,238,653	-		HER17_RS05615	0.35	-0.5
1,238,653	-		HER17_RS05615	0.35	-1.3
1,238,653	-		HER17_RS05615	0.35	+0.3
1,238,869	-		HER17_RS05615	0.45	-1.7
1,238,967	+		HER17_RS05615	0.50	-2.0
1,238,997	+		HER17_RS05615	0.52	+1.6
1,238,997	+		HER17_RS05615	0.52	+1.3
1,238,997	+		HER17_RS05615	0.52	-0.9
1,238,997	+		HER17_RS05615	0.52	+1.0
1,239,041	+		HER17_RS05615	0.54	+0.2
1,239,219	-		HER17_RS05615	0.63	-1.5
1,239,294	+		HER17_RS05615	0.67	+0.3
1,239,294	+		HER17_RS05615	0.67	+0.6
1,239,294	+		HER17_RS05615	0.67	-0.7
1,239,295	-		HER17_RS05615	0.67	-1.9
1,239,295	-		HER17_RS05615	0.67	-1.7
1,239,388	-		HER17_RS05615	0.71	-0.3
1,239,388	-		HER17_RS05615	0.71	+3.1
1,239,420	+		HER17_RS05615	0.73	+1.9
1,239,420	+		HER17_RS05615	0.73	+0.3
1,239,420	+		HER17_RS05615	0.73	+1.5
1,239,420	+		HER17_RS05615	0.73	-0.5
1,239,420	+		HER17_RS05615	0.73	-0.5
1,239,421	-		HER17_RS05615	0.73	+3.2
1,239,421	-		HER17_RS05615	0.73	-0.4
1,239,421	-		HER17_RS05615	0.73	-0.1
1,239,447	+		HER17_RS05615	0.74	+1.1
1,239,447	+		HER17_RS05615	0.74	-1.2
1,239,535	+		HER17_RS05615	0.78	-1.0
1,239,535	+		HER17_RS05615	0.78	-0.3
1,239,536	-		HER17_RS05615	0.79	-0.2
1,239,561	-		HER17_RS05615	0.80	+1.1
1,239,564	+		HER17_RS05615	0.80	+0.5
1,239,624	+		HER17_RS05615	0.83	+0.1
1,239,640	-		HER17_RS05615	0.84	-1.3
1,239,732	+		HER17_RS05615	0.88	+1.3
1,239,851	+				-0.1
1,239,851	+				+1.1
1,239,852	-				+1.7
1,239,852	-				+0.4
1,239,852	-				+0.2
1,239,922	-				+0.4
1,239,934	+				-0.5
1,239,943	+				-1.9
1,239,943	+				-2.0
1,239,947	+				+0.1
1,239,947	+				+0.0
1,239,947	+				+0.4
1,239,947	+				-0.3
1,239,948	-				-0.5
1,239,968	-				-1.3
1,239,968	-				+0.5
1,240,153	+		HER17_RS05620	0.24	-0.9
1,240,153	+		HER17_RS05620	0.24	+0.8
1,240,153	+		HER17_RS05620	0.24	+0.8
1,240,153	+		HER17_RS05620	0.24	+2.4
1,240,154	-		HER17_RS05620	0.24	+0.4
1,240,154	-		HER17_RS05620	0.24	-2.0
1,240,220	+		HER17_RS05620	0.35	-0.5
1,240,220	+		HER17_RS05620	0.35	+1.3
1,240,221	-		HER17_RS05620	0.35	-0.2
1,240,221	-		HER17_RS05620	0.35	+0.6
1,240,221	-		HER17_RS05620	0.35	-0.5
1,240,226	-		HER17_RS05620	0.36	+0.9
1,240,276	+		HER17_RS05620	0.45	+0.1
1,240,276	+		HER17_RS05620	0.45	+4.4
1,240,276	+		HER17_RS05620	0.45	-0.5
1,240,306	+		HER17_RS05620	0.50	+0.7
1,240,368	-		HER17_RS05620	0.60	+0.1
1,240,471	+		HER17_RS05620	0.78	+0.1
1,240,472	-		HER17_RS05620	0.78	-0.5
1,240,477	-		HER17_RS05620	0.79	-1.2
1,240,497	+		HER17_RS05620	0.82	-0.9
1,240,497	+		HER17_RS05620	0.82	-0.9
1,240,497	+		HER17_RS05620	0.82	+1.2
1,240,497	+		HER17_RS05620	0.82	+1.0
1,240,498	-		HER17_RS05620	0.82	-1.1
1,240,543	-		HER17_RS05620	0.90	-0.9
1,240,577	+				-0.5
1,240,578	-				-0.7
1,240,578	-				-1.9
1,240,633	+				+0.3
1,240,639	-				+0.9
1,240,715	+				+1.1
1,240,716	-				+2.1
1,240,716	-				+1.1
1,240,716	-				-0.2
1,240,766	-				-0.1
1,240,805	-				+1.1
1,240,847	-				-0.7
1,240,875	+				-1.5
1,240,876	-				+0.7
1,240,876	-				+0.3
1,240,876	-				-2.3
1,240,890	+		HER17_RS05625	0.10	-0.5
1,240,893	+		HER17_RS05625	0.11	-0.3
1,240,893	+		HER17_RS05625	0.11	-0.9
1,240,894	-		HER17_RS05625	0.11	-1.9
1,240,894	-		HER17_RS05625	0.11	+0.6
1,240,894	-		HER17_RS05625	0.11	-0.2
1,240,894	-		HER17_RS05625	0.11	-0.6
1,240,894	-		HER17_RS05625	0.11	+0.1
1,240,906	+		HER17_RS05625	0.11	+1.4
1,240,952	+		HER17_RS05625	0.15	+3.6