Experiment: Tuber-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS03670 and HER17_RS03675 are separated by 648 nucleotides HER17_RS03675 and HER17_RS03680 are separated by 165 nucleotides
HER17_RS03670: HER17_RS03670 - cytochrome P450, at 834,094 to 835,482
_RS03670
HER17_RS03675: HER17_RS03675 - envelope stress response protein PspG, at 836,131 to 836,403
_RS03675
HER17_RS03680: HER17_RS03680 - tRNA dihydrouridine(20/20a) synthase DusA, at 836,569 to 837,591
_RS03680
Position (kb) 836
837 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 835.225 kb on + strand, within HER17_RS03670 at 835.225 kb on + strand, within HER17_RS03670 at 835.226 kb on - strand, within HER17_RS03670 at 835.331 kb on + strand, within HER17_RS03670 at 835.361 kb on + strand at 835.361 kb on + strand at 835.361 kb on + strand at 835.361 kb on + strand at 835.362 kb on - strand at 835.365 kb on + strand at 835.366 kb on - strand at 835.425 kb on + strand at 835.425 kb on + strand at 835.480 kb on + strand at 835.552 kb on + strand at 835.563 kb on + strand at 835.573 kb on + strand at 835.600 kb on + strand at 835.621 kb on + strand at 835.621 kb on + strand at 835.621 kb on + strand at 835.621 kb on + strand at 835.621 kb on + strand at 835.621 kb on + strand at 835.621 kb on + strand at 835.621 kb on + strand at 835.621 kb on + strand at 835.622 kb on - strand at 835.622 kb on - strand at 835.622 kb on - strand at 835.622 kb on - strand at 835.622 kb on - strand at 835.622 kb on - strand at 835.622 kb on - strand at 835.622 kb on - strand at 835.622 kb on - strand at 835.622 kb on - strand at 835.625 kb on + strand at 835.626 kb on - strand at 835.626 kb on - strand at 835.670 kb on - strand at 835.672 kb on + strand at 835.673 kb on - strand at 835.750 kb on + strand at 835.751 kb on - strand at 835.758 kb on + strand at 835.759 kb on - strand at 835.786 kb on + strand at 835.786 kb on + strand at 835.831 kb on + strand at 835.846 kb on + strand at 835.846 kb on + strand at 835.846 kb on + strand at 835.847 kb on - strand at 835.847 kb on - strand at 835.849 kb on + strand at 835.849 kb on + strand at 835.849 kb on + strand at 835.849 kb on + strand at 835.849 kb on + strand at 835.850 kb on - strand at 835.850 kb on - strand at 835.850 kb on - strand at 835.850 kb on - strand at 835.850 kb on - strand at 835.881 kb on + strand at 835.917 kb on + strand at 835.957 kb on + strand at 835.957 kb on + strand at 835.958 kb on - strand at 835.958 kb on - strand at 836.033 kb on + strand at 836.044 kb on + strand at 836.056 kb on + strand at 836.059 kb on + strand at 836.065 kb on - strand at 836.075 kb on + strand at 836.080 kb on - strand at 836.159 kb on + strand, within HER17_RS03675 at 836.165 kb on + strand, within HER17_RS03675 at 836.178 kb on + strand, within HER17_RS03675 at 836.178 kb on + strand, within HER17_RS03675 at 836.178 kb on + strand, within HER17_RS03675 at 836.178 kb on + strand, within HER17_RS03675 at 836.178 kb on + strand, within HER17_RS03675 at 836.179 kb on - strand, within HER17_RS03675 at 836.179 kb on - strand, within HER17_RS03675 at 836.179 kb on - strand, within HER17_RS03675 at 836.179 kb on - strand, within HER17_RS03675 at 836.179 kb on - strand, within HER17_RS03675 at 836.179 kb on - strand, within HER17_RS03675 at 836.180 kb on + strand, within HER17_RS03675 at 836.181 kb on - strand, within HER17_RS03675 at 836.181 kb on - strand, within HER17_RS03675 at 836.196 kb on - strand, within HER17_RS03675 at 836.196 kb on - strand, within HER17_RS03675 at 836.301 kb on + strand, within HER17_RS03675 at 836.301 kb on + strand, within HER17_RS03675 at 836.301 kb on + strand, within HER17_RS03675 at 836.301 kb on + strand, within HER17_RS03675 at 836.301 kb on + strand, within HER17_RS03675 at 836.301 kb on + strand, within HER17_RS03675 at 836.301 kb on + strand, within HER17_RS03675 at 836.302 kb on - strand, within HER17_RS03675 at 836.302 kb on - strand, within HER17_RS03675 at 836.302 kb on - strand, within HER17_RS03675 at 836.302 kb on - strand, within HER17_RS03675 at 836.302 kb on - strand, within HER17_RS03675 at 836.302 kb on - strand, within HER17_RS03675 at 836.305 kb on + strand, within HER17_RS03675 at 836.305 kb on + strand, within HER17_RS03675 at 836.306 kb on - strand, within HER17_RS03675 at 836.306 kb on - strand, within HER17_RS03675 at 836.459 kb on + strand at 836.460 kb on - strand at 836.460 kb on - strand at 836.460 kb on - strand at 836.462 kb on - strand at 836.462 kb on - strand at 836.492 kb on + strand at 836.492 kb on + strand at 836.648 kb on + strand at 836.649 kb on - strand at 836.649 kb on - strand at 836.717 kb on - strand, within HER17_RS03680 at 836.717 kb on - strand, within HER17_RS03680 at 836.717 kb on - strand, within HER17_RS03680 at 836.717 kb on - strand, within HER17_RS03680 at 836.749 kb on - strand, within HER17_RS03680 at 836.750 kb on + strand, within HER17_RS03680 at 836.750 kb on + strand, within HER17_RS03680 at 836.750 kb on + strand, within HER17_RS03680 at 836.750 kb on + strand, within HER17_RS03680 at 836.750 kb on + strand, within HER17_RS03680 at 836.751 kb on - strand, within HER17_RS03680 at 836.751 kb on - strand, within HER17_RS03680 at 836.756 kb on + strand, within HER17_RS03680 at 836.756 kb on + strand, within HER17_RS03680 at 836.757 kb on - strand, within HER17_RS03680 at 836.757 kb on - strand, within HER17_RS03680 at 836.757 kb on - strand, within HER17_RS03680 at 836.757 kb on - strand, within HER17_RS03680 at 836.757 kb on - strand, within HER17_RS03680 at 836.887 kb on + strand, within HER17_RS03680 at 836.888 kb on - strand, within HER17_RS03680 at 836.917 kb on - strand, within HER17_RS03680 at 836.969 kb on + strand, within HER17_RS03680 at 837.094 kb on - strand, within HER17_RS03680 at 837.113 kb on + strand, within HER17_RS03680 at 837.113 kb on + strand, within HER17_RS03680 at 837.113 kb on + strand, within HER17_RS03680 at 837.114 kb on - strand, within HER17_RS03680 at 837.154 kb on - strand, within HER17_RS03680 at 837.189 kb on + strand, within HER17_RS03680 at 837.189 kb on + strand, within HER17_RS03680 at 837.190 kb on - strand, within HER17_RS03680 at 837.190 kb on - strand, within HER17_RS03680 at 837.247 kb on + strand, within HER17_RS03680 at 837.279 kb on + strand, within HER17_RS03680 at 837.279 kb on + strand, within HER17_RS03680 at 837.392 kb on + strand, within HER17_RS03680 at 837.403 kb on - strand, within HER17_RS03680
Per-strain Table
Position Strand Gene LocusTag Fraction Tuber-Atlantic remove 835,225 + HER17_RS03670 0.81 -0.2 835,225 + HER17_RS03670 0.81 +2.1 835,226 - HER17_RS03670 0.81 -0.5 835,331 + HER17_RS03670 0.89 -0.3 835,361 + +0.4 835,361 + +0.4 835,361 + +0.4 835,361 + -0.5 835,362 - -0.3 835,365 + +0.8 835,366 - -0.4 835,425 + -0.5 835,425 + -1.2 835,480 + +1.5 835,552 + -2.6 835,563 + +0.6 835,573 + -0.2 835,600 + +1.4 835,621 + -0.4 835,621 + +1.1 835,621 + -0.2 835,621 + -2.5 835,621 + -1.0 835,621 + +0.8 835,621 + +0.8 835,621 + -0.1 835,621 + +1.9 835,622 - -0.9 835,622 - -0.1 835,622 - -1.1 835,622 - +0.0 835,622 - -2.0 835,622 - -0.6 835,622 - -0.1 835,622 - -1.0 835,622 - +1.1 835,622 - -1.2 835,625 + +0.8 835,626 - -0.8 835,626 - -0.0 835,670 - -0.6 835,672 + +1.8 835,673 - +0.1 835,750 + +0.9 835,751 - +0.0 835,758 + +0.3 835,759 - -1.2 835,786 + -0.8 835,786 + -0.8 835,831 + +0.3 835,846 + +0.0 835,846 + +0.1 835,846 + +2.6 835,847 - +0.4 835,847 - +1.4 835,849 + -0.3 835,849 + +2.4 835,849 + +0.0 835,849 + +0.0 835,849 + -2.1 835,850 - -0.2 835,850 - +0.1 835,850 - +2.2 835,850 - +0.6 835,850 - -0.6 835,881 + +0.4 835,917 + +0.5 835,957 + -1.4 835,957 + -0.4 835,958 - +1.6 835,958 - -0.6 836,033 + +0.5 836,044 + -1.8 836,056 + -0.4 836,059 + -0.4 836,065 - +0.1 836,075 + -0.5 836,080 - -0.5 836,159 + HER17_RS03675 0.10 +1.2 836,165 + HER17_RS03675 0.12 +2.0 836,178 + HER17_RS03675 0.17 +0.9 836,178 + HER17_RS03675 0.17 -0.1 836,178 + HER17_RS03675 0.17 -1.4 836,178 + HER17_RS03675 0.17 -1.6 836,178 + HER17_RS03675 0.17 +0.5 836,179 - HER17_RS03675 0.18 +0.8 836,179 - HER17_RS03675 0.18 -0.7 836,179 - HER17_RS03675 0.18 -0.1 836,179 - HER17_RS03675 0.18 +0.4 836,179 - HER17_RS03675 0.18 +0.2 836,179 - HER17_RS03675 0.18 -0.6 836,180 + HER17_RS03675 0.18 -0.2 836,181 - HER17_RS03675 0.18 -0.1 836,181 - HER17_RS03675 0.18 -0.8 836,196 - HER17_RS03675 0.24 +0.6 836,196 - HER17_RS03675 0.24 +1.1 836,301 + HER17_RS03675 0.62 -0.1 836,301 + HER17_RS03675 0.62 -0.4 836,301 + HER17_RS03675 0.62 -0.1 836,301 + HER17_RS03675 0.62 +0.6 836,301 + HER17_RS03675 0.62 -0.6 836,301 + HER17_RS03675 0.62 +0.4 836,301 + HER17_RS03675 0.62 +4.1 836,302 - HER17_RS03675 0.63 +0.1 836,302 - HER17_RS03675 0.63 -0.2 836,302 - HER17_RS03675 0.63 -0.6 836,302 - HER17_RS03675 0.63 +0.8 836,302 - HER17_RS03675 0.63 +0.4 836,302 - HER17_RS03675 0.63 -1.3 836,305 + HER17_RS03675 0.64 -0.2 836,305 + HER17_RS03675 0.64 -0.2 836,306 - HER17_RS03675 0.64 +0.5 836,306 - HER17_RS03675 0.64 +0.9 836,459 + +0.0 836,460 - +0.4 836,460 - +0.8 836,460 - -1.0 836,462 - -0.7 836,462 - +0.9 836,492 + +0.2 836,492 + +3.3 836,648 + +1.4 836,649 - -0.4 836,649 - +1.1 836,717 - HER17_RS03680 0.14 +1.4 836,717 - HER17_RS03680 0.14 -0.4 836,717 - HER17_RS03680 0.14 -0.7 836,717 - HER17_RS03680 0.14 +1.0 836,749 - HER17_RS03680 0.18 +0.4 836,750 + HER17_RS03680 0.18 -3.2 836,750 + HER17_RS03680 0.18 -0.6 836,750 + HER17_RS03680 0.18 +0.4 836,750 + HER17_RS03680 0.18 -1.7 836,750 + HER17_RS03680 0.18 -1.6 836,751 - HER17_RS03680 0.18 +0.3 836,751 - HER17_RS03680 0.18 +1.4 836,756 + HER17_RS03680 0.18 -0.9 836,756 + HER17_RS03680 0.18 -1.4 836,757 - HER17_RS03680 0.18 -0.6 836,757 - HER17_RS03680 0.18 -0.2 836,757 - HER17_RS03680 0.18 -0.4 836,757 - HER17_RS03680 0.18 -1.0 836,757 - HER17_RS03680 0.18 -0.1 836,887 + HER17_RS03680 0.31 -1.3 836,888 - HER17_RS03680 0.31 +0.4 836,917 - HER17_RS03680 0.34 -0.3 836,969 + HER17_RS03680 0.39 +0.4 837,094 - HER17_RS03680 0.51 +0.1 837,113 + HER17_RS03680 0.53 -0.7 837,113 + HER17_RS03680 0.53 -0.6 837,113 + HER17_RS03680 0.53 -0.1 837,114 - HER17_RS03680 0.53 +1.4 837,154 - HER17_RS03680 0.57 -0.4 837,189 + HER17_RS03680 0.61 +1.9 837,189 + HER17_RS03680 0.61 -1.1 837,190 - HER17_RS03680 0.61 -1.1 837,190 - HER17_RS03680 0.61 -1.1 837,247 + HER17_RS03680 0.66 -1.4 837,279 + HER17_RS03680 0.69 -0.6 837,279 + HER17_RS03680 0.69 +1.4 837,392 + HER17_RS03680 0.80 -1.3 837,403 - HER17_RS03680 0.82 -0.1
Or see this region's nucleotide sequence