Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS03410

Experiment: Tuber-Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS03400 and HER17_RS03405 are separated by 11 nucleotidesHER17_RS03405 and HER17_RS03410 are separated by 85 nucleotidesHER17_RS03410 and HER17_RS03415 are separated by 89 nucleotides HER17_RS03400: HER17_RS03400 - multidrug efflux SMR transporter, at 773,642 to 773,968 _RS03400 HER17_RS03405: HER17_RS03405 - multidrug efflux SMR transporter, at 773,980 to 774,402 _RS03405 HER17_RS03410: HER17_RS03410 - choline TMA-lyase-activating enzyme, at 774,488 to 775,438 _RS03410 HER17_RS03415: HER17_RS03415 - choline trimethylamine-lyase, at 775,528 to 777,903 _RS03415 Position (kb) 774 775 776Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7at 773.540 kb on - strandat 773.558 kb on - strandat 773.577 kb on - strandat 773.602 kb on + strandat 773.641 kb on - strandat 773.643 kb on + strandat 773.643 kb on + strandat 773.643 kb on + strandat 773.643 kb on + strandat 773.643 kb on + strandat 773.647 kb on + strandat 773.647 kb on + strandat 773.648 kb on - strandat 773.688 kb on - strand, within HER17_RS03400at 773.688 kb on - strand, within HER17_RS03400at 773.688 kb on - strand, within HER17_RS03400at 773.781 kb on - strand, within HER17_RS03400at 773.808 kb on + strand, within HER17_RS03400at 773.885 kb on - strand, within HER17_RS03400at 773.981 kb on + strandat 773.982 kb on - strandat 774.008 kb on - strandat 774.156 kb on + strand, within HER17_RS03405at 774.274 kb on - strand, within HER17_RS03405at 774.334 kb on - strand, within HER17_RS03405at 774.334 kb on - strand, within HER17_RS03405at 774.364 kb on + strandat 774.365 kb on - strandat 774.367 kb on + strandat 774.367 kb on + strandat 774.367 kb on + strandat 774.402 kb on + strandat 774.402 kb on + strandat 774.403 kb on - strandat 774.405 kb on + strandat 774.405 kb on + strandat 774.405 kb on + strandat 774.406 kb on - strandat 774.406 kb on - strandat 774.419 kb on + strandat 774.420 kb on - strandat 774.420 kb on - strandat 774.463 kb on - strandat 774.470 kb on - strandat 774.476 kb on - strandat 774.477 kb on + strandat 774.477 kb on + strandat 774.478 kb on - strandat 774.478 kb on - strandat 774.565 kb on - strandat 774.565 kb on - strandat 774.589 kb on - strand, within HER17_RS03410at 774.623 kb on + strand, within HER17_RS03410at 774.634 kb on - strand, within HER17_RS03410at 774.641 kb on + strand, within HER17_RS03410at 774.641 kb on + strand, within HER17_RS03410at 774.642 kb on - strand, within HER17_RS03410at 774.656 kb on + strand, within HER17_RS03410at 774.656 kb on + strand, within HER17_RS03410at 774.656 kb on + strand, within HER17_RS03410at 774.657 kb on - strand, within HER17_RS03410at 774.657 kb on - strand, within HER17_RS03410at 774.657 kb on - strand, within HER17_RS03410at 774.658 kb on + strand, within HER17_RS03410at 774.658 kb on + strand, within HER17_RS03410at 774.658 kb on + strand, within HER17_RS03410at 774.659 kb on - strand, within HER17_RS03410at 774.659 kb on - strand, within HER17_RS03410at 774.687 kb on + strand, within HER17_RS03410at 774.687 kb on + strand, within HER17_RS03410at 774.687 kb on + strand, within HER17_RS03410at 774.746 kb on - strand, within HER17_RS03410at 774.799 kb on + strand, within HER17_RS03410at 774.800 kb on - strand, within HER17_RS03410at 774.897 kb on + strand, within HER17_RS03410at 774.937 kb on + strand, within HER17_RS03410at 774.938 kb on - strand, within HER17_RS03410at 774.941 kb on - strand, within HER17_RS03410at 774.941 kb on - strand, within HER17_RS03410at 774.993 kb on - strand, within HER17_RS03410at 775.041 kb on + strand, within HER17_RS03410at 775.041 kb on + strand, within HER17_RS03410at 775.041 kb on + strand, within HER17_RS03410at 775.041 kb on + strand, within HER17_RS03410at 775.041 kb on + strand, within HER17_RS03410at 775.042 kb on - strand, within HER17_RS03410at 775.042 kb on - strand, within HER17_RS03410at 775.042 kb on - strand, within HER17_RS03410at 775.100 kb on + strand, within HER17_RS03410at 775.100 kb on + strand, within HER17_RS03410at 775.100 kb on + strand, within HER17_RS03410at 775.101 kb on - strand, within HER17_RS03410at 775.264 kb on + strand, within HER17_RS03410at 775.264 kb on + strand, within HER17_RS03410at 775.265 kb on - strand, within HER17_RS03410at 775.334 kb on - strand, within HER17_RS03410at 775.348 kb on + strandat 775.462 kb on + strandat 775.462 kb on + strandat 775.462 kb on + strandat 775.462 kb on + strandat 775.462 kb on + strandat 775.462 kb on + strandat 775.463 kb on - strandat 775.463 kb on - strandat 775.463 kb on - strandat 775.463 kb on - strandat 775.499 kb on + strandat 775.546 kb on - strandat 775.579 kb on - strandat 775.579 kb on - strandat 775.582 kb on + strandat 775.582 kb on + strandat 775.605 kb on - strandat 775.605 kb on - strandat 775.666 kb on + strandat 775.682 kb on + strandat 775.682 kb on + strandat 775.791 kb on + strand, within HER17_RS03415at 775.792 kb on - strand, within HER17_RS03415at 775.800 kb on + strand, within HER17_RS03415at 775.890 kb on + strand, within HER17_RS03415at 775.890 kb on + strand, within HER17_RS03415at 775.891 kb on - strand, within HER17_RS03415at 775.891 kb on - strand, within HER17_RS03415at 775.989 kb on + strand, within HER17_RS03415at 776.001 kb on - strand, within HER17_RS03415at 776.001 kb on - strand, within HER17_RS03415at 776.046 kb on + strand, within HER17_RS03415at 776.087 kb on + strand, within HER17_RS03415at 776.128 kb on - strand, within HER17_RS03415at 776.190 kb on - strand, within HER17_RS03415at 776.221 kb on + strand, within HER17_RS03415at 776.221 kb on + strand, within HER17_RS03415at 776.221 kb on + strand, within HER17_RS03415at 776.221 kb on + strand, within HER17_RS03415at 776.221 kb on + strand, within HER17_RS03415at 776.221 kb on + strand, within HER17_RS03415at 776.222 kb on - strand, within HER17_RS03415at 776.222 kb on - strand, within HER17_RS03415at 776.222 kb on - strand, within HER17_RS03415at 776.225 kb on + strand, within HER17_RS03415at 776.225 kb on + strand, within HER17_RS03415at 776.225 kb on + strand, within HER17_RS03415at 776.225 kb on + strand, within HER17_RS03415at 776.225 kb on + strand, within HER17_RS03415at 776.225 kb on + strand, within HER17_RS03415at 776.225 kb on + strand, within HER17_RS03415at 776.226 kb on - strand, within HER17_RS03415at 776.226 kb on - strand, within HER17_RS03415at 776.226 kb on - strand, within HER17_RS03415

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Per-strain Table

Position Strand Gene LocusTag Fraction Tuber-Atlantic
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773,540 - +0.1
773,558 - -0.2
773,577 - +1.7
773,602 + -1.3
773,641 - +1.0
773,643 + -1.2
773,643 + +0.1
773,643 + +0.1
773,643 + -2.2
773,643 + +0.6
773,647 + +0.4
773,647 + -0.7
773,648 - +0.0
773,688 - HER17_RS03400 0.14 +0.4
773,688 - HER17_RS03400 0.14 +2.9
773,688 - HER17_RS03400 0.14 -1.2
773,781 - HER17_RS03400 0.43 +0.8
773,808 + HER17_RS03400 0.51 -0.9
773,885 - HER17_RS03400 0.74 -0.5
773,981 + -0.7
773,982 - +0.2
774,008 - -0.2
774,156 + HER17_RS03405 0.42 -0.2
774,274 - HER17_RS03405 0.70 -1.6
774,334 - HER17_RS03405 0.84 -0.2
774,334 - HER17_RS03405 0.84 +0.4
774,364 + -0.8
774,365 - -1.5
774,367 + -0.1
774,367 + -0.9
774,367 + +0.0
774,402 + -1.8
774,402 + +0.2
774,403 - +0.7
774,405 + -0.2
774,405 + +0.3
774,405 + +0.7
774,406 - +0.0
774,406 - +1.4
774,419 + -1.3
774,420 - -0.7
774,420 - +1.0
774,463 - -0.1
774,470 - -0.7
774,476 - +2.0
774,477 + -1.0
774,477 + +2.4
774,478 - +1.4
774,478 - +0.4
774,565 - -0.2
774,565 - +1.6
774,589 - HER17_RS03410 0.11 -0.3
774,623 + HER17_RS03410 0.14 -0.9
774,634 - HER17_RS03410 0.15 -0.2
774,641 + HER17_RS03410 0.16 +2.1
774,641 + HER17_RS03410 0.16 +2.2
774,642 - HER17_RS03410 0.16 -1.4
774,656 + HER17_RS03410 0.18 +0.4
774,656 + HER17_RS03410 0.18 -0.9
774,656 + HER17_RS03410 0.18 -0.8
774,657 - HER17_RS03410 0.18 -2.5
774,657 - HER17_RS03410 0.18 +0.4
774,657 - HER17_RS03410 0.18 +0.8
774,658 + HER17_RS03410 0.18 +0.2
774,658 + HER17_RS03410 0.18 +0.7
774,658 + HER17_RS03410 0.18 +1.6
774,659 - HER17_RS03410 0.18 +0.4
774,659 - HER17_RS03410 0.18 +0.1
774,687 + HER17_RS03410 0.21 +1.2
774,687 + HER17_RS03410 0.21 +1.4
774,687 + HER17_RS03410 0.21 +2.3
774,746 - HER17_RS03410 0.27 +0.2
774,799 + HER17_RS03410 0.33 -1.2
774,800 - HER17_RS03410 0.33 -0.7
774,897 + HER17_RS03410 0.43 -1.2
774,937 + HER17_RS03410 0.47 +1.4
774,938 - HER17_RS03410 0.47 -0.4
774,941 - HER17_RS03410 0.48 -0.0
774,941 - HER17_RS03410 0.48 -1.9
774,993 - HER17_RS03410 0.53 +0.7
775,041 + HER17_RS03410 0.58 +1.6
775,041 + HER17_RS03410 0.58 +1.9
775,041 + HER17_RS03410 0.58 -1.0
775,041 + HER17_RS03410 0.58 +0.6
775,041 + HER17_RS03410 0.58 -0.2
775,042 - HER17_RS03410 0.58 +0.4
775,042 - HER17_RS03410 0.58 -0.5
775,042 - HER17_RS03410 0.58 -0.6
775,100 + HER17_RS03410 0.64 +3.4
775,100 + HER17_RS03410 0.64 +0.8
775,100 + HER17_RS03410 0.64 -0.9
775,101 - HER17_RS03410 0.64 +7.0
775,264 + HER17_RS03410 0.82 -0.8
775,264 + HER17_RS03410 0.82 +0.0
775,265 - HER17_RS03410 0.82 +1.4
775,334 - HER17_RS03410 0.89 +0.4
775,348 + +1.4
775,462 + -1.4
775,462 + +1.1
775,462 + -0.4
775,462 + +0.7
775,462 + +0.6
775,462 + -1.4
775,463 - -0.4
775,463 - -0.9
775,463 - +0.6
775,463 - +3.7
775,499 + -0.2
775,546 - -0.3
775,579 - +1.5
775,579 - +0.2
775,582 + -1.3
775,582 + -0.5
775,605 - +1.6
775,605 - +0.1
775,666 + -0.9
775,682 + -0.3
775,682 + -0.2
775,791 + HER17_RS03415 0.11 +0.5
775,792 - HER17_RS03415 0.11 +1.2
775,800 + HER17_RS03415 0.11 -3.1
775,890 + HER17_RS03415 0.15 -1.6
775,890 + HER17_RS03415 0.15 +0.2
775,891 - HER17_RS03415 0.15 -0.1
775,891 - HER17_RS03415 0.15 -0.2
775,989 + HER17_RS03415 0.19 +0.5
776,001 - HER17_RS03415 0.20 +0.6
776,001 - HER17_RS03415 0.20 -0.2
776,046 + HER17_RS03415 0.22 +1.4
776,087 + HER17_RS03415 0.24 -0.5
776,128 - HER17_RS03415 0.25 +0.4
776,190 - HER17_RS03415 0.28 -1.2
776,221 + HER17_RS03415 0.29 +0.4
776,221 + HER17_RS03415 0.29 -0.4
776,221 + HER17_RS03415 0.29 +0.2
776,221 + HER17_RS03415 0.29 +1.0
776,221 + HER17_RS03415 0.29 -0.7
776,221 + HER17_RS03415 0.29 -0.5
776,222 - HER17_RS03415 0.29 -0.3
776,222 - HER17_RS03415 0.29 +0.4
776,222 - HER17_RS03415 0.29 -0.2
776,225 + HER17_RS03415 0.29 -2.1
776,225 + HER17_RS03415 0.29 +0.4
776,225 + HER17_RS03415 0.29 -0.8
776,225 + HER17_RS03415 0.29 +0.0
776,225 + HER17_RS03415 0.29 +2.1
776,225 + HER17_RS03415 0.29 +0.1
776,225 + HER17_RS03415 0.29 +0.4
776,226 - HER17_RS03415 0.29 -0.6
776,226 - HER17_RS03415 0.29 -2.3
776,226 - HER17_RS03415 0.29 +2.2

Or see this region's nucleotide sequence