Experiment: Tuber-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS02935 and HER17_RS02940 are separated by 111 nucleotides HER17_RS02940 and HER17_RS02945 are separated by 142 nucleotides HER17_RS02945 and HER17_RS02950 are separated by 40 nucleotides
HER17_RS02935: HER17_RS02935 - LysR family transcriptional regulator, at 659,548 to 660,453
_RS02935
HER17_RS02940: HER17_RS02940 - DMT family transporter, at 660,565 to 661,089
_RS02940
HER17_RS02945: HER17_RS02945 - hypothetical protein, at 661,232 to 661,426
_RS02945
HER17_RS02950: HER17_RS02950 - bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH, at 661,467 to 662,324
_RS02950
Position (kb) 660
661
662 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 660.007 kb on + strand, within HER17_RS02935 at 660.097 kb on + strand, within HER17_RS02935 at 660.097 kb on + strand, within HER17_RS02935 at 660.097 kb on + strand, within HER17_RS02935 at 660.097 kb on + strand, within HER17_RS02935 at 660.097 kb on + strand, within HER17_RS02935 at 660.097 kb on + strand, within HER17_RS02935 at 660.097 kb on + strand, within HER17_RS02935 at 660.097 kb on + strand, within HER17_RS02935 at 660.098 kb on - strand, within HER17_RS02935 at 660.098 kb on - strand, within HER17_RS02935 at 660.098 kb on - strand, within HER17_RS02935 at 660.098 kb on - strand, within HER17_RS02935 at 660.098 kb on - strand, within HER17_RS02935 at 660.098 kb on - strand, within HER17_RS02935 at 660.098 kb on - strand, within HER17_RS02935 at 660.098 kb on - strand, within HER17_RS02935 at 660.171 kb on + strand, within HER17_RS02935 at 660.171 kb on + strand, within HER17_RS02935 at 660.171 kb on + strand, within HER17_RS02935 at 660.172 kb on - strand, within HER17_RS02935 at 660.172 kb on - strand, within HER17_RS02935 at 660.172 kb on - strand, within HER17_RS02935 at 660.172 kb on - strand, within HER17_RS02935 at 660.172 kb on - strand, within HER17_RS02935 at 660.319 kb on + strand, within HER17_RS02935 at 660.319 kb on + strand, within HER17_RS02935 at 660.320 kb on - strand, within HER17_RS02935 at 660.320 kb on - strand, within HER17_RS02935 at 660.436 kb on - strand at 660.443 kb on - strand at 660.471 kb on + strand at 660.528 kb on + strand at 660.528 kb on + strand at 660.528 kb on + strand at 660.528 kb on + strand at 660.528 kb on + strand at 660.528 kb on + strand at 660.529 kb on - strand at 660.529 kb on - strand at 660.529 kb on - strand at 660.529 kb on - strand at 660.529 kb on - strand at 660.529 kb on - strand at 660.529 kb on - strand at 660.529 kb on - strand at 660.529 kb on - strand at 660.544 kb on + strand at 660.613 kb on - strand at 660.620 kb on + strand, within HER17_RS02940 at 660.621 kb on - strand, within HER17_RS02940 at 660.621 kb on - strand, within HER17_RS02940 at 660.621 kb on - strand, within HER17_RS02940 at 660.621 kb on - strand, within HER17_RS02940 at 660.708 kb on - strand, within HER17_RS02940 at 660.719 kb on + strand, within HER17_RS02940 at 660.720 kb on - strand, within HER17_RS02940 at 660.720 kb on - strand, within HER17_RS02940 at 660.720 kb on - strand, within HER17_RS02940 at 660.720 kb on - strand, within HER17_RS02940 at 660.720 kb on - strand, within HER17_RS02940 at 660.723 kb on + strand, within HER17_RS02940 at 660.723 kb on + strand, within HER17_RS02940 at 660.723 kb on + strand, within HER17_RS02940 at 660.723 kb on + strand, within HER17_RS02940 at 660.723 kb on + strand, within HER17_RS02940 at 660.723 kb on + strand, within HER17_RS02940 at 660.724 kb on - strand, within HER17_RS02940 at 660.724 kb on - strand, within HER17_RS02940 at 660.724 kb on - strand, within HER17_RS02940 at 660.788 kb on + strand, within HER17_RS02940 at 660.835 kb on + strand, within HER17_RS02940 at 660.835 kb on + strand, within HER17_RS02940 at 660.835 kb on + strand, within HER17_RS02940 at 660.835 kb on + strand, within HER17_RS02940 at 660.835 kb on + strand, within HER17_RS02940 at 660.835 kb on + strand, within HER17_RS02940 at 660.836 kb on - strand, within HER17_RS02940 at 660.836 kb on - strand, within HER17_RS02940 at 660.836 kb on - strand, within HER17_RS02940 at 660.837 kb on + strand, within HER17_RS02940 at 660.837 kb on + strand, within HER17_RS02940 at 660.838 kb on - strand, within HER17_RS02940 at 660.838 kb on - strand, within HER17_RS02940 at 660.885 kb on + strand, within HER17_RS02940 at 660.886 kb on - strand, within HER17_RS02940 at 660.984 kb on - strand, within HER17_RS02940 at 661.027 kb on + strand, within HER17_RS02940 at 661.027 kb on + strand, within HER17_RS02940 at 661.028 kb on - strand, within HER17_RS02940 at 661.028 kb on - strand, within HER17_RS02940 at 661.071 kb on + strand at 661.072 kb on - strand at 661.072 kb on - strand at 661.087 kb on + strand at 661.087 kb on + strand at 661.088 kb on - strand at 661.096 kb on + strand at 661.096 kb on + strand at 661.096 kb on + strand at 661.097 kb on - strand at 661.097 kb on - strand at 661.097 kb on - strand at 661.097 kb on - strand at 661.097 kb on - strand at 661.097 kb on - strand at 661.097 kb on - strand at 661.140 kb on + strand at 661.140 kb on + strand at 661.140 kb on + strand at 661.141 kb on - strand at 661.141 kb on - strand at 661.141 kb on - strand at 661.141 kb on - strand at 661.149 kb on + strand at 661.150 kb on - strand at 661.150 kb on - strand at 661.150 kb on - strand at 661.211 kb on - strand at 661.211 kb on - strand at 661.211 kb on - strand at 661.213 kb on + strand at 661.213 kb on + strand at 661.213 kb on + strand at 661.213 kb on + strand at 661.213 kb on + strand at 661.214 kb on - strand at 661.214 kb on - strand at 661.214 kb on - strand at 661.217 kb on + strand at 661.217 kb on + strand at 661.218 kb on - strand at 661.218 kb on - strand at 661.227 kb on + strand at 661.228 kb on - strand at 661.241 kb on - strand at 661.308 kb on + strand, within HER17_RS02945 at 661.309 kb on - strand, within HER17_RS02945 at 661.387 kb on + strand, within HER17_RS02945 at 661.388 kb on - strand, within HER17_RS02945 at 661.388 kb on - strand, within HER17_RS02945 at 661.422 kb on + strand at 661.422 kb on + strand at 661.423 kb on - strand at 661.423 kb on - strand at 661.423 kb on - strand at 661.445 kb on + strand at 661.455 kb on - strand at 661.537 kb on + strand at 661.538 kb on - strand at 661.593 kb on - strand, within HER17_RS02950 at 661.596 kb on + strand, within HER17_RS02950 at 661.604 kb on - strand, within HER17_RS02950 at 661.658 kb on + strand, within HER17_RS02950 at 661.663 kb on + strand, within HER17_RS02950 at 661.664 kb on - strand, within HER17_RS02950 at 661.664 kb on - strand, within HER17_RS02950 at 661.705 kb on - strand, within HER17_RS02950 at 661.745 kb on + strand, within HER17_RS02950 at 661.799 kb on + strand, within HER17_RS02950 at 661.850 kb on + strand, within HER17_RS02950 at 661.851 kb on - strand, within HER17_RS02950 at 661.858 kb on + strand, within HER17_RS02950 at 661.858 kb on + strand, within HER17_RS02950 at 661.858 kb on + strand, within HER17_RS02950 at 661.858 kb on + strand, within HER17_RS02950 at 661.858 kb on + strand, within HER17_RS02950 at 661.859 kb on - strand, within HER17_RS02950 at 661.859 kb on - strand, within HER17_RS02950 at 661.859 kb on - strand, within HER17_RS02950 at 661.859 kb on - strand, within HER17_RS02950 at 661.859 kb on - strand, within HER17_RS02950 at 661.859 kb on - strand, within HER17_RS02950 at 661.859 kb on - strand, within HER17_RS02950 at 661.859 kb on - strand, within HER17_RS02950 at 661.882 kb on + strand, within HER17_RS02950 at 662.020 kb on - strand, within HER17_RS02950 at 662.084 kb on + strand, within HER17_RS02950
Per-strain Table
Position Strand Gene LocusTag Fraction Tuber-Atlantic remove 660,007 + HER17_RS02935 0.51 -1.0 660,097 + HER17_RS02935 0.61 +1.1 660,097 + HER17_RS02935 0.61 -2.9 660,097 + HER17_RS02935 0.61 -0.6 660,097 + HER17_RS02935 0.61 -0.9 660,097 + HER17_RS02935 0.61 +0.8 660,097 + HER17_RS02935 0.61 -1.6 660,097 + HER17_RS02935 0.61 +0.7 660,097 + HER17_RS02935 0.61 -1.2 660,098 - HER17_RS02935 0.61 -0.6 660,098 - HER17_RS02935 0.61 +0.2 660,098 - HER17_RS02935 0.61 +0.2 660,098 - HER17_RS02935 0.61 -0.3 660,098 - HER17_RS02935 0.61 -0.6 660,098 - HER17_RS02935 0.61 +0.8 660,098 - HER17_RS02935 0.61 -0.8 660,098 - HER17_RS02935 0.61 -0.3 660,171 + HER17_RS02935 0.69 +1.6 660,171 + HER17_RS02935 0.69 -0.2 660,171 + HER17_RS02935 0.69 +0.9 660,172 - HER17_RS02935 0.69 -0.9 660,172 - HER17_RS02935 0.69 -0.5 660,172 - HER17_RS02935 0.69 +1.0 660,172 - HER17_RS02935 0.69 -1.0 660,172 - HER17_RS02935 0.69 -2.2 660,319 + HER17_RS02935 0.85 +0.3 660,319 + HER17_RS02935 0.85 -1.4 660,320 - HER17_RS02935 0.85 -1.6 660,320 - HER17_RS02935 0.85 -0.2 660,436 - -0.8 660,443 - +0.6 660,471 + +0.8 660,528 + +0.7 660,528 + +0.6 660,528 + -0.6 660,528 + -1.3 660,528 + -0.6 660,528 + -0.1 660,529 - +0.1 660,529 - -0.8 660,529 - +0.8 660,529 - +0.4 660,529 - -0.3 660,529 - +0.8 660,529 - -0.2 660,529 - +0.4 660,529 - +0.9 660,544 + -1.2 660,613 - +1.7 660,620 + HER17_RS02940 0.10 -1.0 660,621 - HER17_RS02940 0.11 -0.6 660,621 - HER17_RS02940 0.11 +1.6 660,621 - HER17_RS02940 0.11 -0.9 660,621 - HER17_RS02940 0.11 +0.4 660,708 - HER17_RS02940 0.27 +0.6 660,719 + HER17_RS02940 0.29 +0.3 660,720 - HER17_RS02940 0.30 -0.2 660,720 - HER17_RS02940 0.30 +1.0 660,720 - HER17_RS02940 0.30 -1.2 660,720 - HER17_RS02940 0.30 -1.9 660,720 - HER17_RS02940 0.30 -0.3 660,723 + HER17_RS02940 0.30 -1.2 660,723 + HER17_RS02940 0.30 -2.5 660,723 + HER17_RS02940 0.30 -0.4 660,723 + HER17_RS02940 0.30 -0.2 660,723 + HER17_RS02940 0.30 +0.3 660,723 + HER17_RS02940 0.30 +1.4 660,724 - HER17_RS02940 0.30 +1.6 660,724 - HER17_RS02940 0.30 +1.2 660,724 - HER17_RS02940 0.30 +0.2 660,788 + HER17_RS02940 0.42 +1.4 660,835 + HER17_RS02940 0.51 +0.4 660,835 + HER17_RS02940 0.51 +0.1 660,835 + HER17_RS02940 0.51 -0.3 660,835 + HER17_RS02940 0.51 -0.9 660,835 + HER17_RS02940 0.51 +2.4 660,835 + HER17_RS02940 0.51 -1.0 660,836 - HER17_RS02940 0.52 -0.6 660,836 - HER17_RS02940 0.52 +2.6 660,836 - HER17_RS02940 0.52 +0.4 660,837 + HER17_RS02940 0.52 -0.1 660,837 + HER17_RS02940 0.52 -0.2 660,838 - HER17_RS02940 0.52 -0.5 660,838 - HER17_RS02940 0.52 +0.4 660,885 + HER17_RS02940 0.61 +0.4 660,886 - HER17_RS02940 0.61 +0.1 660,984 - HER17_RS02940 0.80 +1.0 661,027 + HER17_RS02940 0.88 +0.7 661,027 + HER17_RS02940 0.88 -1.6 661,028 - HER17_RS02940 0.88 +0.2 661,028 - HER17_RS02940 0.88 -0.9 661,071 + -0.2 661,072 - -0.2 661,072 - +0.5 661,087 + -1.2 661,087 + -1.3 661,088 - +1.4 661,096 + -0.5 661,096 + -1.2 661,096 + -1.0 661,097 - +1.4 661,097 - -2.1 661,097 - +0.5 661,097 - -0.5 661,097 - +0.7 661,097 - -0.6 661,097 - -0.2 661,140 + +0.1 661,140 + +1.7 661,140 + -0.2 661,141 - -1.1 661,141 - +1.9 661,141 - +0.5 661,141 - -2.3 661,149 + +1.9 661,150 - -0.2 661,150 - -0.9 661,150 - -0.2 661,211 - -1.8 661,211 - -1.8 661,211 - +0.3 661,213 + -0.5 661,213 + +1.7 661,213 + -0.1 661,213 + -0.2 661,213 + -0.9 661,214 - +2.2 661,214 - +2.1 661,214 - +0.0 661,217 + +2.0 661,217 + +1.0 661,218 - -0.3 661,218 - +0.4 661,227 + -0.4 661,228 - +1.1 661,241 - +0.2 661,308 + HER17_RS02945 0.39 +1.3 661,309 - HER17_RS02945 0.39 -0.2 661,387 + HER17_RS02945 0.79 -1.5 661,388 - HER17_RS02945 0.80 -0.2 661,388 - HER17_RS02945 0.80 -0.0 661,422 + -0.6 661,422 + +0.1 661,423 - -2.2 661,423 - -0.4 661,423 - +1.4 661,445 + +2.3 661,455 - -0.6 661,537 + -0.4 661,538 - -1.8 661,593 - HER17_RS02950 0.15 -0.2 661,596 + HER17_RS02950 0.15 -1.6 661,604 - HER17_RS02950 0.16 -1.6 661,658 + HER17_RS02950 0.22 +0.8 661,663 + HER17_RS02950 0.23 -0.2 661,664 - HER17_RS02950 0.23 +2.0 661,664 - HER17_RS02950 0.23 -1.2 661,705 - HER17_RS02950 0.28 -0.3 661,745 + HER17_RS02950 0.32 -0.3 661,799 + HER17_RS02950 0.39 -0.9 661,850 + HER17_RS02950 0.45 -3.1 661,851 - HER17_RS02950 0.45 -0.6 661,858 + HER17_RS02950 0.46 -1.8 661,858 + HER17_RS02950 0.46 -0.6 661,858 + HER17_RS02950 0.46 -2.1 661,858 + HER17_RS02950 0.46 -0.9 661,858 + HER17_RS02950 0.46 -0.0 661,859 - HER17_RS02950 0.46 -0.6 661,859 - HER17_RS02950 0.46 -0.2 661,859 - HER17_RS02950 0.46 +0.8 661,859 - HER17_RS02950 0.46 -1.4 661,859 - HER17_RS02950 0.46 -0.9 661,859 - HER17_RS02950 0.46 -0.6 661,859 - HER17_RS02950 0.46 -1.8 661,859 - HER17_RS02950 0.46 +0.4 661,882 + HER17_RS02950 0.48 -1.2 662,020 - HER17_RS02950 0.64 -0.8 662,084 + HER17_RS02950 0.72 -1.5
Or see this region's nucleotide sequence