Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS02815

Experiment: Tuber-Atlantic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHER17_RS02810 and HER17_RS02815 are separated by 313 nucleotidesHER17_RS02815 and HER17_RS02820 are separated by 77 nucleotides HER17_RS02810: HER17_RS02810 - peroxide stress protein YaaA, at 630,606 to 631,379 _RS02810 HER17_RS02815: HER17_RS02815 - transaldolase, at 631,693 to 632,646 _RS02815 HER17_RS02820: HER17_RS02820 - GGDEF domain-containing protein, at 632,724 to 633,812 _RS02820 Position (kb) 631 632 633Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7at 630.771 kb on + strand, within HER17_RS02810at 630.776 kb on + strand, within HER17_RS02810at 630.776 kb on + strand, within HER17_RS02810at 630.827 kb on + strand, within HER17_RS02810at 630.856 kb on + strand, within HER17_RS02810at 630.857 kb on - strand, within HER17_RS02810at 630.876 kb on - strand, within HER17_RS02810at 631.037 kb on - strand, within HER17_RS02810at 631.037 kb on - strand, within HER17_RS02810at 631.052 kb on + strand, within HER17_RS02810at 631.053 kb on - strand, within HER17_RS02810at 631.117 kb on + strand, within HER17_RS02810at 631.117 kb on + strand, within HER17_RS02810at 631.118 kb on - strand, within HER17_RS02810at 631.118 kb on - strand, within HER17_RS02810at 631.130 kb on + strand, within HER17_RS02810at 631.187 kb on + strand, within HER17_RS02810at 631.265 kb on + strand, within HER17_RS02810at 631.313 kb on + strandat 631.313 kb on + strandat 631.313 kb on + strandat 631.314 kb on - strandat 631.314 kb on - strandat 631.314 kb on - strandat 631.314 kb on - strandat 631.343 kb on - strandat 631.343 kb on - strandat 631.367 kb on + strandat 631.367 kb on + strandat 631.368 kb on - strandat 631.370 kb on + strandat 631.370 kb on + strandat 631.371 kb on - strandat 631.371 kb on - strandat 631.371 kb on - strandat 631.373 kb on + strandat 631.373 kb on + strandat 631.373 kb on + strandat 631.373 kb on + strandat 631.373 kb on + strandat 631.374 kb on - strandat 631.374 kb on - strandat 631.374 kb on - strandat 631.374 kb on - strandat 631.415 kb on + strandat 631.415 kb on + strandat 631.415 kb on + strandat 631.415 kb on + strandat 631.416 kb on - strandat 631.416 kb on - strandat 631.416 kb on - strandat 631.416 kb on - strandat 631.418 kb on + strandat 631.420 kb on + strandat 631.420 kb on + strandat 631.420 kb on + strandat 631.420 kb on + strandat 631.421 kb on - strandat 631.421 kb on - strandat 631.452 kb on + strandat 631.452 kb on + strandat 631.452 kb on + strandat 631.452 kb on + strandat 631.452 kb on + strandat 631.453 kb on - strandat 631.453 kb on - strandat 631.453 kb on - strandat 631.453 kb on - strandat 631.453 kb on - strandat 631.453 kb on - strandat 631.453 kb on - strandat 631.453 kb on - strandat 631.454 kb on + strandat 631.454 kb on + strandat 631.454 kb on + strandat 631.454 kb on + strandat 631.454 kb on + strandat 631.454 kb on + strandat 631.455 kb on - strandat 631.455 kb on - strandat 631.455 kb on - strandat 631.455 kb on - strandat 631.457 kb on + strandat 631.457 kb on + strandat 631.457 kb on + strandat 631.457 kb on + strandat 631.458 kb on - strandat 631.458 kb on - strandat 631.458 kb on - strandat 631.458 kb on - strandat 631.501 kb on + strandat 631.501 kb on + strandat 631.580 kb on + strandat 631.580 kb on + strandat 631.581 kb on - strandat 631.584 kb on - strandat 631.619 kb on + strandat 631.619 kb on + strandat 631.619 kb on + strandat 631.620 kb on - strandat 631.620 kb on - strandat 631.620 kb on - strandat 631.620 kb on - strandat 631.620 kb on - strandat 631.623 kb on + strandat 631.623 kb on + strandat 631.624 kb on - strandat 631.624 kb on - strandat 631.639 kb on - strandat 631.639 kb on - strandat 631.639 kb on - strandat 631.640 kb on + strandat 631.640 kb on + strandat 631.641 kb on - strandat 631.641 kb on - strandat 631.641 kb on - strandat 631.641 kb on - strandat 631.648 kb on - strandat 631.648 kb on - strandat 631.648 kb on - strandat 631.670 kb on + strandat 631.670 kb on + strandat 631.670 kb on + strandat 631.671 kb on - strandat 631.673 kb on - strandat 631.701 kb on + strandat 631.736 kb on + strandat 631.736 kb on + strandat 631.737 kb on - strandat 631.772 kb on - strandat 631.999 kb on + strand, within HER17_RS02815at 631.999 kb on + strand, within HER17_RS02815at 631.999 kb on + strand, within HER17_RS02815at 632.000 kb on - strand, within HER17_RS02815at 632.000 kb on - strand, within HER17_RS02815at 632.000 kb on - strand, within HER17_RS02815at 632.047 kb on + strand, within HER17_RS02815at 632.047 kb on + strand, within HER17_RS02815at 632.048 kb on - strand, within HER17_RS02815at 632.048 kb on - strand, within HER17_RS02815at 632.077 kb on - strand, within HER17_RS02815at 632.151 kb on + strand, within HER17_RS02815at 632.151 kb on + strand, within HER17_RS02815at 632.248 kb on + strand, within HER17_RS02815at 632.320 kb on + strand, within HER17_RS02815at 632.326 kb on + strand, within HER17_RS02815at 632.326 kb on + strand, within HER17_RS02815at 632.327 kb on - strand, within HER17_RS02815at 632.327 kb on - strand, within HER17_RS02815at 632.329 kb on + strand, within HER17_RS02815at 632.330 kb on - strand, within HER17_RS02815at 632.485 kb on + strand, within HER17_RS02815at 632.485 kb on + strand, within HER17_RS02815at 632.485 kb on + strand, within HER17_RS02815at 632.485 kb on + strand, within HER17_RS02815at 632.486 kb on - strand, within HER17_RS02815at 632.486 kb on - strand, within HER17_RS02815at 632.536 kb on + strand, within HER17_RS02815at 632.537 kb on - strand, within HER17_RS02815at 632.537 kb on - strand, within HER17_RS02815at 632.571 kb on + strandat 632.572 kb on - strandat 632.592 kb on + strandat 632.593 kb on - strandat 632.593 kb on - strandat 632.645 kb on - strandat 632.697 kb on + strandat 632.698 kb on - strandat 632.719 kb on + strandat 632.719 kb on + strandat 632.720 kb on - strandat 632.720 kb on - strandat 632.720 kb on - strandat 632.720 kb on - strandat 632.726 kb on - strandat 632.762 kb on - strandat 632.768 kb on + strandat 632.796 kb on + strandat 632.797 kb on - strandat 632.810 kb on + strandat 632.810 kb on + strandat 632.811 kb on - strandat 632.811 kb on - strandat 632.813 kb on + strandat 632.814 kb on - strandat 632.814 kb on - strandat 632.819 kb on - strandat 632.819 kb on - strandat 632.819 kb on - strandat 632.885 kb on + strand, within HER17_RS02820at 632.886 kb on - strand, within HER17_RS02820at 632.915 kb on + strand, within HER17_RS02820at 632.915 kb on + strand, within HER17_RS02820at 632.915 kb on + strand, within HER17_RS02820at 632.915 kb on + strand, within HER17_RS02820at 632.915 kb on + strand, within HER17_RS02820at 632.915 kb on + strand, within HER17_RS02820at 632.915 kb on + strand, within HER17_RS02820at 632.915 kb on + strand, within HER17_RS02820at 632.916 kb on - strand, within HER17_RS02820at 632.916 kb on - strand, within HER17_RS02820at 632.916 kb on - strand, within HER17_RS02820at 632.916 kb on - strand, within HER17_RS02820at 632.916 kb on - strand, within HER17_RS02820at 632.916 kb on - strand, within HER17_RS02820at 632.917 kb on + strand, within HER17_RS02820at 632.917 kb on + strand, within HER17_RS02820at 632.917 kb on + strand, within HER17_RS02820at 632.917 kb on + strand, within HER17_RS02820at 632.917 kb on + strand, within HER17_RS02820at 632.917 kb on + strand, within HER17_RS02820at 632.917 kb on + strand, within HER17_RS02820at 632.917 kb on + strand, within HER17_RS02820at 632.917 kb on + strand, within HER17_RS02820at 632.917 kb on + strand, within HER17_RS02820at 632.917 kb on + strand, within HER17_RS02820at 632.917 kb on + strand, within HER17_RS02820at 632.918 kb on - strand, within HER17_RS02820at 632.918 kb on - strand, within HER17_RS02820at 632.918 kb on - strand, within HER17_RS02820at 632.918 kb on - strand, within HER17_RS02820at 632.918 kb on - strand, within HER17_RS02820at 632.918 kb on - strand, within HER17_RS02820at 632.918 kb on - strand, within HER17_RS02820at 632.918 kb on - strand, within HER17_RS02820at 632.918 kb on - strand, within HER17_RS02820at 632.918 kb on - strand, within HER17_RS02820at 632.918 kb on - strand, within HER17_RS02820at 632.936 kb on + strand, within HER17_RS02820at 632.972 kb on + strand, within HER17_RS02820at 632.973 kb on - strand, within HER17_RS02820at 633.062 kb on + strand, within HER17_RS02820at 633.063 kb on - strand, within HER17_RS02820at 633.077 kb on + strand, within HER17_RS02820at 633.077 kb on + strand, within HER17_RS02820at 633.077 kb on + strand, within HER17_RS02820at 633.078 kb on - strand, within HER17_RS02820at 633.083 kb on - strand, within HER17_RS02820at 633.147 kb on - strand, within HER17_RS02820at 633.178 kb on - strand, within HER17_RS02820at 633.253 kb on - strand, within HER17_RS02820at 633.276 kb on + strand, within HER17_RS02820at 633.284 kb on + strand, within HER17_RS02820at 633.284 kb on + strand, within HER17_RS02820at 633.285 kb on - strand, within HER17_RS02820at 633.363 kb on - strand, within HER17_RS02820at 633.371 kb on + strand, within HER17_RS02820at 633.372 kb on - strand, within HER17_RS02820at 633.375 kb on + strand, within HER17_RS02820at 633.376 kb on - strand, within HER17_RS02820at 633.417 kb on - strand, within HER17_RS02820at 633.417 kb on - strand, within HER17_RS02820at 633.436 kb on + strand, within HER17_RS02820at 633.459 kb on - strand, within HER17_RS02820at 633.470 kb on + strand, within HER17_RS02820at 633.471 kb on - strand, within HER17_RS02820at 633.492 kb on - strand, within HER17_RS02820at 633.492 kb on - strand, within HER17_RS02820at 633.513 kb on + strand, within HER17_RS02820at 633.514 kb on - strand, within HER17_RS02820at 633.525 kb on - strand, within HER17_RS02820at 633.525 kb on - strand, within HER17_RS02820at 633.525 kb on - strand, within HER17_RS02820at 633.537 kb on + strand, within HER17_RS02820at 633.537 kb on + strand, within HER17_RS02820at 633.538 kb on - strand, within HER17_RS02820at 633.538 kb on - strand, within HER17_RS02820at 633.538 kb on - strand, within HER17_RS02820at 633.549 kb on - strand, within HER17_RS02820at 633.551 kb on + strand, within HER17_RS02820at 633.552 kb on - strand, within HER17_RS02820at 633.552 kb on - strand, within HER17_RS02820at 633.552 kb on - strand, within HER17_RS02820at 633.583 kb on + strand, within HER17_RS02820at 633.583 kb on + strand, within HER17_RS02820at 633.583 kb on + strand, within HER17_RS02820at 633.583 kb on + strand, within HER17_RS02820at 633.584 kb on - strand, within HER17_RS02820at 633.584 kb on - strand, within HER17_RS02820at 633.584 kb on - strand, within HER17_RS02820at 633.584 kb on - strand, within HER17_RS02820at 633.632 kb on + strand, within HER17_RS02820at 633.637 kb on + strand, within HER17_RS02820at 633.637 kb on + strand, within HER17_RS02820at 633.637 kb on + strand, within HER17_RS02820at 633.637 kb on + strand, within HER17_RS02820at 633.646 kb on + strand, within HER17_RS02820

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Tuber-Atlantic
remove
630,771 + HER17_RS02810 0.21 +0.3
630,776 + HER17_RS02810 0.22 +2.1
630,776 + HER17_RS02810 0.22 -1.5
630,827 + HER17_RS02810 0.29 +0.5
630,856 + HER17_RS02810 0.32 +0.0
630,857 - HER17_RS02810 0.32 +0.7
630,876 - HER17_RS02810 0.35 +0.0
631,037 - HER17_RS02810 0.56 +0.2
631,037 - HER17_RS02810 0.56 +0.4
631,052 + HER17_RS02810 0.58 -0.7
631,053 - HER17_RS02810 0.58 -0.2
631,117 + HER17_RS02810 0.66 +1.0
631,117 + HER17_RS02810 0.66 -0.2
631,118 - HER17_RS02810 0.66 -0.0
631,118 - HER17_RS02810 0.66 +0.2
631,130 + HER17_RS02810 0.68 +1.4
631,187 + HER17_RS02810 0.75 -1.9
631,265 + HER17_RS02810 0.85 -1.2
631,313 + -1.2
631,313 + +0.4
631,313 + -0.9
631,314 - +0.3
631,314 - -1.4
631,314 - -1.9
631,314 - +0.8
631,343 - +0.4
631,343 - -0.2
631,367 + +0.5
631,367 + -0.4
631,368 - +0.3
631,370 + +0.1
631,370 + +0.2
631,371 - -1.4
631,371 - +0.6
631,371 - -1.1
631,373 + -0.8
631,373 + +0.7
631,373 + -1.4
631,373 + -0.2
631,373 + -0.7
631,374 - -0.6
631,374 - -2.2
631,374 - +0.9
631,374 - +0.8
631,415 + -0.4
631,415 + -1.0
631,415 + -0.9
631,415 + -2.2
631,416 - +2.2
631,416 - -0.4
631,416 - +1.7
631,416 - -0.9
631,418 + -0.8
631,420 + -0.2
631,420 + -0.2
631,420 + +2.7
631,420 + +0.5
631,421 - -3.4
631,421 - -2.5
631,452 + -0.4
631,452 + +1.4
631,452 + -0.6
631,452 + -1.1
631,452 + +0.1
631,453 - -0.2
631,453 - -0.4
631,453 - -0.7
631,453 - -0.2
631,453 - +1.2
631,453 - -0.8
631,453 - +0.7
631,453 - -1.2
631,454 + +0.7
631,454 + -0.2
631,454 + +1.0
631,454 + -0.1
631,454 + -0.2
631,454 + +0.0
631,455 - -0.2
631,455 - -0.3
631,455 - +0.2
631,455 - -0.2
631,457 + -0.1
631,457 + -1.5
631,457 + +0.4
631,457 + -0.8
631,458 - +1.2
631,458 - +0.2
631,458 - -0.3
631,458 - -0.6
631,501 + +2.2
631,501 + -0.8
631,580 + -1.1
631,580 + -1.4
631,581 - -0.0
631,584 - -1.5
631,619 + -1.6
631,619 + -0.3
631,619 + -1.8
631,620 - +0.4
631,620 - -1.6
631,620 - +0.0
631,620 - +0.0
631,620 - -1.3
631,623 + +2.0
631,623 + +1.8
631,624 - -1.1
631,624 - -1.5
631,639 - +2.5
631,639 - +0.2
631,639 - +0.4
631,640 + +0.4
631,640 + -0.2
631,641 - -0.6
631,641 - -1.3
631,641 - -0.2
631,641 - -0.9
631,648 - +0.0
631,648 - +0.7
631,648 - -1.4
631,670 + +3.5
631,670 + +0.1
631,670 + -2.4
631,671 - -0.2
631,673 - -1.0
631,701 + -0.3
631,736 + +1.4
631,736 + -0.4
631,737 - -0.8
631,772 - -0.8
631,999 + HER17_RS02815 0.32 +3.6
631,999 + HER17_RS02815 0.32 -0.4
631,999 + HER17_RS02815 0.32 -1.2
632,000 - HER17_RS02815 0.32 -0.5
632,000 - HER17_RS02815 0.32 -0.9
632,000 - HER17_RS02815 0.32 +0.4
632,047 + HER17_RS02815 0.37 -0.5
632,047 + HER17_RS02815 0.37 -0.9
632,048 - HER17_RS02815 0.37 -0.6
632,048 - HER17_RS02815 0.37 +0.6
632,077 - HER17_RS02815 0.40 -0.6
632,151 + HER17_RS02815 0.48 -0.6
632,151 + HER17_RS02815 0.48 +1.1
632,248 + HER17_RS02815 0.58 -1.1
632,320 + HER17_RS02815 0.66 +3.0
632,326 + HER17_RS02815 0.66 +1.6
632,326 + HER17_RS02815 0.66 -0.2
632,327 - HER17_RS02815 0.66 +0.5
632,327 - HER17_RS02815 0.66 +0.7
632,329 + HER17_RS02815 0.67 -0.6
632,330 - HER17_RS02815 0.67 +0.2
632,485 + HER17_RS02815 0.83 +0.3
632,485 + HER17_RS02815 0.83 -1.2
632,485 + HER17_RS02815 0.83 -0.3
632,485 + HER17_RS02815 0.83 +1.7
632,486 - HER17_RS02815 0.83 -1.8
632,486 - HER17_RS02815 0.83 -0.4
632,536 + HER17_RS02815 0.88 +0.1
632,537 - HER17_RS02815 0.88 -1.6
632,537 - HER17_RS02815 0.88 -0.2
632,571 + +0.4
632,572 - +0.5
632,592 + -0.0
632,593 - -1.8
632,593 - -0.2
632,645 - +1.1
632,697 + +3.6
632,698 - +1.7
632,719 + -0.6
632,719 + -1.6
632,720 - +0.8
632,720 - +1.1
632,720 - +3.1
632,720 - +1.2
632,726 - -0.6
632,762 - -1.4
632,768 + +0.1
632,796 + -0.6
632,797 - +1.1
632,810 + +1.2
632,810 + -0.3
632,811 - -1.4
632,811 - +0.7
632,813 + -0.2
632,814 - +0.3
632,814 - +1.4
632,819 - +1.2
632,819 - +0.1
632,819 - -0.0
632,885 + HER17_RS02820 0.15 +2.3
632,886 - HER17_RS02820 0.15 -2.4
632,915 + HER17_RS02820 0.18 -0.7
632,915 + HER17_RS02820 0.18 -0.7
632,915 + HER17_RS02820 0.18 +0.8
632,915 + HER17_RS02820 0.18 -0.8
632,915 + HER17_RS02820 0.18 +0.4
632,915 + HER17_RS02820 0.18 +0.4
632,915 + HER17_RS02820 0.18 -0.1
632,915 + HER17_RS02820 0.18 +0.1
632,916 - HER17_RS02820 0.18 +0.8
632,916 - HER17_RS02820 0.18 -0.1
632,916 - HER17_RS02820 0.18 -0.6
632,916 - HER17_RS02820 0.18 -1.2
632,916 - HER17_RS02820 0.18 -0.9
632,916 - HER17_RS02820 0.18 -0.1
632,917 + HER17_RS02820 0.18 +0.8
632,917 + HER17_RS02820 0.18 -0.3
632,917 + HER17_RS02820 0.18 -0.3
632,917 + HER17_RS02820 0.18 -0.3
632,917 + HER17_RS02820 0.18 +1.6
632,917 + HER17_RS02820 0.18 -0.2
632,917 + HER17_RS02820 0.18 +1.4
632,917 + HER17_RS02820 0.18 +1.8
632,917 + HER17_RS02820 0.18 +7.1
632,917 + HER17_RS02820 0.18 +0.6
632,917 + HER17_RS02820 0.18 +1.4
632,917 + HER17_RS02820 0.18 +0.2
632,918 - HER17_RS02820 0.18 +1.2
632,918 - HER17_RS02820 0.18 -1.5
632,918 - HER17_RS02820 0.18 -0.2
632,918 - HER17_RS02820 0.18 -0.3
632,918 - HER17_RS02820 0.18 +1.9
632,918 - HER17_RS02820 0.18 -0.9
632,918 - HER17_RS02820 0.18 +0.7
632,918 - HER17_RS02820 0.18 +2.0
632,918 - HER17_RS02820 0.18 -1.0
632,918 - HER17_RS02820 0.18 +1.9
632,918 - HER17_RS02820 0.18 -1.6
632,936 + HER17_RS02820 0.19 +2.6
632,972 + HER17_RS02820 0.23 +1.0
632,973 - HER17_RS02820 0.23 -1.1
633,062 + HER17_RS02820 0.31 -1.2
633,063 - HER17_RS02820 0.31 +0.7
633,077 + HER17_RS02820 0.32 -0.3
633,077 + HER17_RS02820 0.32 +1.1
633,077 + HER17_RS02820 0.32 +1.4
633,078 - HER17_RS02820 0.33 -0.5
633,083 - HER17_RS02820 0.33 +0.5
633,147 - HER17_RS02820 0.39 -0.7
633,178 - HER17_RS02820 0.42 -0.5
633,253 - HER17_RS02820 0.49 +1.4
633,276 + HER17_RS02820 0.51 -1.8
633,284 + HER17_RS02820 0.51 -0.5
633,284 + HER17_RS02820 0.51 +1.2
633,285 - HER17_RS02820 0.52 -0.5
633,363 - HER17_RS02820 0.59 +2.4
633,371 + HER17_RS02820 0.59 +0.9
633,372 - HER17_RS02820 0.60 +2.1
633,375 + HER17_RS02820 0.60 -0.4
633,376 - HER17_RS02820 0.60 -1.4
633,417 - HER17_RS02820 0.64 -2.4
633,417 - HER17_RS02820 0.64 -0.0
633,436 + HER17_RS02820 0.65 +0.1
633,459 - HER17_RS02820 0.67 -0.4
633,470 + HER17_RS02820 0.69 -1.1
633,471 - HER17_RS02820 0.69 +0.2
633,492 - HER17_RS02820 0.71 +0.4
633,492 - HER17_RS02820 0.71 -0.2
633,513 + HER17_RS02820 0.72 -1.0
633,514 - HER17_RS02820 0.73 +0.2
633,525 - HER17_RS02820 0.74 +0.4
633,525 - HER17_RS02820 0.74 +2.3
633,525 - HER17_RS02820 0.74 +0.6
633,537 + HER17_RS02820 0.75 -0.1
633,537 + HER17_RS02820 0.75 +2.0
633,538 - HER17_RS02820 0.75 +1.2
633,538 - HER17_RS02820 0.75 -0.2
633,538 - HER17_RS02820 0.75 +1.0
633,549 - HER17_RS02820 0.76 +0.1
633,551 + HER17_RS02820 0.76 +2.5
633,552 - HER17_RS02820 0.76 -1.6
633,552 - HER17_RS02820 0.76 +0.2
633,552 - HER17_RS02820 0.76 +0.2
633,583 + HER17_RS02820 0.79 +1.1
633,583 + HER17_RS02820 0.79 -0.3
633,583 + HER17_RS02820 0.79 -1.4
633,583 + HER17_RS02820 0.79 +5.0
633,584 - HER17_RS02820 0.79 +0.2
633,584 - HER17_RS02820 0.79 +2.0
633,584 - HER17_RS02820 0.79 +0.7
633,584 - HER17_RS02820 0.79 -0.0
633,632 + HER17_RS02820 0.83 +0.2
633,637 + HER17_RS02820 0.84 +0.3
633,637 + HER17_RS02820 0.84 +1.0
633,637 + HER17_RS02820 0.84 +0.6
633,637 + HER17_RS02820 0.84 -0.9
633,646 + HER17_RS02820 0.85 +0.5

Or see this region's nucleotide sequence