Experiment: Tuber-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS02310 and HER17_RS02315 are separated by 512 nucleotides HER17_RS02315 and HER17_RS02320 are separated by 204 nucleotides
HER17_RS02310: HER17_RS02310 - methionine synthase, at 513,291 to 516,974
_RS02310
HER17_RS02315: HER17_RS02315 - AraC family transcriptional regulator, at 517,487 to 518,443
_RS02315
HER17_RS02320: HER17_RS02320 - TonB-dependent siderophore receptor, at 518,648 to 520,750
_RS02320
Position (kb) 517
518
519 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 516.501 kb on - strand, within HER17_RS02310 at 516.537 kb on + strand, within HER17_RS02310 at 516.537 kb on + strand, within HER17_RS02310 at 516.537 kb on + strand, within HER17_RS02310 at 516.595 kb on - strand, within HER17_RS02310 at 516.598 kb on + strand, within HER17_RS02310 at 516.598 kb on + strand, within HER17_RS02310 at 516.598 kb on + strand, within HER17_RS02310 at 516.598 kb on + strand, within HER17_RS02310 at 516.599 kb on - strand, within HER17_RS02310 at 516.599 kb on - strand, within HER17_RS02310 at 516.599 kb on - strand, within HER17_RS02310 at 516.599 kb on - strand, within HER17_RS02310 at 516.621 kb on + strand at 516.622 kb on - strand at 516.631 kb on - strand at 516.679 kb on - strand at 516.785 kb on - strand at 516.795 kb on + strand at 516.795 kb on + strand at 516.796 kb on - strand at 516.855 kb on + strand at 516.856 kb on - strand at 516.856 kb on - strand at 516.908 kb on + strand at 516.908 kb on + strand at 516.908 kb on + strand at 516.909 kb on - strand at 516.909 kb on - strand at 516.931 kb on + strand at 516.972 kb on + strand at 516.972 kb on + strand at 516.984 kb on + strand at 516.985 kb on - strand at 516.993 kb on + strand at 516.993 kb on + strand at 516.999 kb on + strand at 516.999 kb on + strand at 516.999 kb on + strand at 517.000 kb on - strand at 517.000 kb on - strand at 517.000 kb on - strand at 517.014 kb on + strand at 517.014 kb on + strand at 517.015 kb on - strand at 517.015 kb on - strand at 517.018 kb on + strand at 517.018 kb on + strand at 517.018 kb on + strand at 517.018 kb on + strand at 517.019 kb on - strand at 517.019 kb on - strand at 517.019 kb on - strand at 517.046 kb on - strand at 517.113 kb on + strand at 517.113 kb on + strand at 517.113 kb on + strand at 517.113 kb on + strand at 517.113 kb on + strand at 517.113 kb on + strand at 517.113 kb on + strand at 517.117 kb on + strand at 517.117 kb on + strand at 517.254 kb on + strand at 517.254 kb on + strand at 517.301 kb on - strand at 517.301 kb on - strand at 517.304 kb on + strand at 517.304 kb on + strand at 517.304 kb on + strand at 517.304 kb on + strand at 517.304 kb on + strand at 517.305 kb on - strand at 517.305 kb on - strand at 517.321 kb on - strand at 517.341 kb on + strand at 517.341 kb on + strand at 517.346 kb on - strand at 517.354 kb on + strand at 517.355 kb on - strand at 517.380 kb on - strand at 517.401 kb on - strand at 517.401 kb on - strand at 517.408 kb on - strand at 517.459 kb on + strand at 517.474 kb on + strand at 517.475 kb on - strand at 517.491 kb on + strand at 517.491 kb on + strand at 517.492 kb on - strand at 517.718 kb on + strand, within HER17_RS02315 at 517.719 kb on - strand, within HER17_RS02315 at 517.719 kb on - strand, within HER17_RS02315 at 517.719 kb on - strand, within HER17_RS02315 at 517.719 kb on - strand, within HER17_RS02315 at 517.720 kb on + strand, within HER17_RS02315 at 517.789 kb on + strand, within HER17_RS02315 at 517.977 kb on - strand, within HER17_RS02315 at 517.980 kb on + strand, within HER17_RS02315 at 517.980 kb on + strand, within HER17_RS02315 at 517.980 kb on + strand, within HER17_RS02315 at 517.980 kb on + strand, within HER17_RS02315 at 517.980 kb on + strand, within HER17_RS02315 at 517.981 kb on - strand, within HER17_RS02315 at 517.981 kb on - strand, within HER17_RS02315 at 517.981 kb on - strand, within HER17_RS02315 at 517.983 kb on + strand, within HER17_RS02315 at 518.058 kb on + strand, within HER17_RS02315 at 518.058 kb on + strand, within HER17_RS02315 at 518.059 kb on - strand, within HER17_RS02315 at 518.059 kb on - strand, within HER17_RS02315 at 518.059 kb on - strand, within HER17_RS02315 at 518.067 kb on + strand, within HER17_RS02315 at 518.186 kb on + strand, within HER17_RS02315 at 518.186 kb on + strand, within HER17_RS02315 at 518.239 kb on + strand, within HER17_RS02315 at 518.258 kb on + strand, within HER17_RS02315 at 518.279 kb on + strand, within HER17_RS02315 at 518.442 kb on - strand at 518.457 kb on - strand at 518.473 kb on - strand at 518.473 kb on - strand at 518.491 kb on + strand at 518.492 kb on - strand at 518.492 kb on - strand at 518.492 kb on - strand at 518.561 kb on + strand at 518.561 kb on + strand at 518.561 kb on + strand at 518.562 kb on - strand at 518.562 kb on - strand at 518.565 kb on + strand at 518.565 kb on + strand at 518.565 kb on + strand at 518.565 kb on + strand at 518.565 kb on + strand at 518.565 kb on + strand at 518.565 kb on + strand at 518.565 kb on + strand at 518.565 kb on + strand at 518.565 kb on + strand at 518.565 kb on + strand at 518.566 kb on - strand at 518.566 kb on - strand at 518.566 kb on - strand at 518.582 kb on + strand at 518.582 kb on + strand at 518.582 kb on + strand at 518.583 kb on - strand at 518.583 kb on - strand at 518.583 kb on - strand at 518.583 kb on - strand at 518.583 kb on - strand at 518.583 kb on - strand at 518.583 kb on - strand at 518.583 kb on - strand at 518.586 kb on + strand at 518.587 kb on - strand at 518.609 kb on + strand at 518.617 kb on - strand at 518.625 kb on + strand at 518.701 kb on + strand at 518.702 kb on - strand at 518.702 kb on - strand at 518.702 kb on - strand at 518.702 kb on - strand at 518.725 kb on + strand at 518.755 kb on - strand at 518.830 kb on + strand at 518.831 kb on - strand at 518.893 kb on + strand, within HER17_RS02320 at 518.893 kb on + strand, within HER17_RS02320 at 518.893 kb on + strand, within HER17_RS02320 at 518.893 kb on + strand, within HER17_RS02320 at 518.906 kb on + strand, within HER17_RS02320 at 518.906 kb on + strand, within HER17_RS02320 at 518.906 kb on + strand, within HER17_RS02320 at 518.907 kb on - strand, within HER17_RS02320 at 518.907 kb on - strand, within HER17_RS02320 at 518.907 kb on - strand, within HER17_RS02320 at 518.907 kb on - strand, within HER17_RS02320 at 518.909 kb on - strand, within HER17_RS02320 at 518.942 kb on + strand, within HER17_RS02320 at 518.942 kb on + strand, within HER17_RS02320 at 518.942 kb on + strand, within HER17_RS02320 at 518.943 kb on - strand, within HER17_RS02320 at 518.943 kb on - strand, within HER17_RS02320 at 518.943 kb on - strand, within HER17_RS02320 at 518.949 kb on + strand, within HER17_RS02320 at 518.950 kb on - strand, within HER17_RS02320 at 518.950 kb on - strand, within HER17_RS02320 at 518.950 kb on - strand, within HER17_RS02320 at 518.988 kb on - strand, within HER17_RS02320 at 519.016 kb on + strand, within HER17_RS02320 at 519.028 kb on + strand, within HER17_RS02320 at 519.029 kb on - strand, within HER17_RS02320 at 519.029 kb on - strand, within HER17_RS02320 at 519.093 kb on + strand, within HER17_RS02320 at 519.099 kb on - strand, within HER17_RS02320 at 519.261 kb on + strand, within HER17_RS02320 at 519.380 kb on + strand, within HER17_RS02320 at 519.380 kb on + strand, within HER17_RS02320 at 519.380 kb on + strand, within HER17_RS02320
Per-strain Table
Position Strand Gene LocusTag Fraction Tuber-Atlantic remove 516,501 - HER17_RS02310 0.87 +1.2 516,537 + HER17_RS02310 0.88 -0.2 516,537 + HER17_RS02310 0.88 +0.4 516,537 + HER17_RS02310 0.88 +0.9 516,595 - HER17_RS02310 0.90 +1.6 516,598 + HER17_RS02310 0.90 +0.7 516,598 + HER17_RS02310 0.90 +1.5 516,598 + HER17_RS02310 0.90 +0.3 516,598 + HER17_RS02310 0.90 -1.2 516,599 - HER17_RS02310 0.90 +0.6 516,599 - HER17_RS02310 0.90 -0.9 516,599 - HER17_RS02310 0.90 -1.0 516,599 - HER17_RS02310 0.90 +0.6 516,621 + +1.4 516,622 - -0.2 516,631 - +0.7 516,679 - -0.5 516,785 - +0.8 516,795 + -0.3 516,795 + -1.2 516,796 - -0.4 516,855 + -0.6 516,856 - +2.3 516,856 - -0.6 516,908 + -0.3 516,908 + +0.8 516,908 + -0.9 516,909 - +0.8 516,909 - +0.4 516,931 + +0.1 516,972 + +0.7 516,972 + +0.3 516,984 + +0.3 516,985 - -0.6 516,993 + -0.0 516,993 + -1.0 516,999 + -1.0 516,999 + +2.9 516,999 + -0.2 517,000 - -0.7 517,000 - +1.3 517,000 - -1.0 517,014 + -0.2 517,014 + +0.9 517,015 - -1.3 517,015 - +1.1 517,018 + +2.4 517,018 + -0.9 517,018 + +0.8 517,018 + +0.1 517,019 - +0.4 517,019 - +0.1 517,019 - +0.8 517,046 - +0.3 517,113 + -3.1 517,113 + -0.4 517,113 + +0.3 517,113 + -0.2 517,113 + -0.8 517,113 + +0.7 517,113 + -0.7 517,117 + -0.2 517,117 + -0.0 517,254 + +1.4 517,254 + +0.3 517,301 - -0.6 517,301 - +1.6 517,304 + -0.8 517,304 + -1.2 517,304 + -1.5 517,304 + +0.4 517,304 + -0.4 517,305 - -0.5 517,305 - +0.3 517,321 - +0.7 517,341 + -0.7 517,341 + +0.3 517,346 - -1.0 517,354 + -0.4 517,355 - -0.4 517,380 - +1.4 517,401 - +0.4 517,401 - +0.7 517,408 - +0.2 517,459 + +0.4 517,474 + -0.4 517,475 - -0.0 517,491 + -0.7 517,491 + -0.3 517,492 - +0.4 517,718 + HER17_RS02315 0.24 +0.8 517,719 - HER17_RS02315 0.24 +0.9 517,719 - HER17_RS02315 0.24 -0.6 517,719 - HER17_RS02315 0.24 +0.8 517,719 - HER17_RS02315 0.24 +0.2 517,720 + HER17_RS02315 0.24 -1.3 517,789 + HER17_RS02315 0.32 +0.8 517,977 - HER17_RS02315 0.51 +0.4 517,980 + HER17_RS02315 0.52 -1.4 517,980 + HER17_RS02315 0.52 -0.0 517,980 + HER17_RS02315 0.52 -1.1 517,980 + HER17_RS02315 0.52 +0.4 517,980 + HER17_RS02315 0.52 +0.2 517,981 - HER17_RS02315 0.52 +0.4 517,981 - HER17_RS02315 0.52 -0.5 517,981 - HER17_RS02315 0.52 +0.5 517,983 + HER17_RS02315 0.52 +1.1 518,058 + HER17_RS02315 0.60 +0.8 518,058 + HER17_RS02315 0.60 +0.0 518,059 - HER17_RS02315 0.60 +1.3 518,059 - HER17_RS02315 0.60 +0.1 518,059 - HER17_RS02315 0.60 +1.8 518,067 + HER17_RS02315 0.61 +0.1 518,186 + HER17_RS02315 0.73 +3.3 518,186 + HER17_RS02315 0.73 +0.7 518,239 + HER17_RS02315 0.79 -1.9 518,258 + HER17_RS02315 0.81 -1.0 518,279 + HER17_RS02315 0.83 +0.1 518,442 - -0.3 518,457 - -0.1 518,473 - -0.8 518,473 - +0.2 518,491 + +0.2 518,492 - -0.1 518,492 - -1.4 518,492 - +2.4 518,561 + +1.7 518,561 + +1.8 518,561 + +0.5 518,562 - +0.4 518,562 - -0.2 518,565 + +0.4 518,565 + -1.4 518,565 + +2.0 518,565 + -0.4 518,565 + +0.1 518,565 + -0.0 518,565 + -0.6 518,565 + +0.7 518,565 + +0.8 518,565 + -0.1 518,565 + +2.0 518,566 - -0.6 518,566 - -0.2 518,566 - -0.5 518,582 + -0.9 518,582 + +0.7 518,582 + -0.0 518,583 - -0.0 518,583 - -0.3 518,583 - -0.1 518,583 - -0.7 518,583 - -0.1 518,583 - +0.1 518,583 - -1.4 518,583 - -0.4 518,586 + -1.6 518,587 - -0.3 518,609 + -0.8 518,617 - -0.0 518,625 + -2.5 518,701 + -0.9 518,702 - -2.5 518,702 - -1.4 518,702 - +0.3 518,702 - +0.4 518,725 + +0.6 518,755 - -1.1 518,830 + -0.2 518,831 - -0.5 518,893 + HER17_RS02320 0.12 +0.2 518,893 + HER17_RS02320 0.12 +0.2 518,893 + HER17_RS02320 0.12 -1.2 518,893 + HER17_RS02320 0.12 +1.4 518,906 + HER17_RS02320 0.12 -2.4 518,906 + HER17_RS02320 0.12 +0.2 518,906 + HER17_RS02320 0.12 -0.8 518,907 - HER17_RS02320 0.12 -1.4 518,907 - HER17_RS02320 0.12 +0.4 518,907 - HER17_RS02320 0.12 -0.2 518,907 - HER17_RS02320 0.12 +0.6 518,909 - HER17_RS02320 0.12 +1.4 518,942 + HER17_RS02320 0.14 +0.6 518,942 + HER17_RS02320 0.14 -0.3 518,942 + HER17_RS02320 0.14 -0.6 518,943 - HER17_RS02320 0.14 -1.0 518,943 - HER17_RS02320 0.14 +0.1 518,943 - HER17_RS02320 0.14 +0.2 518,949 + HER17_RS02320 0.14 +1.4 518,950 - HER17_RS02320 0.14 -1.5 518,950 - HER17_RS02320 0.14 +1.1 518,950 - HER17_RS02320 0.14 +2.1 518,988 - HER17_RS02320 0.16 +0.1 519,016 + HER17_RS02320 0.17 +0.4 519,028 + HER17_RS02320 0.18 +0.4 519,029 - HER17_RS02320 0.18 +0.5 519,029 - HER17_RS02320 0.18 +0.4 519,093 + HER17_RS02320 0.21 +0.6 519,099 - HER17_RS02320 0.21 -1.2 519,261 + HER17_RS02320 0.29 +0.0 519,380 + HER17_RS02320 0.35 -3.8 519,380 + HER17_RS02320 0.35 +0.4 519,380 + HER17_RS02320 0.35 +0.1
Or see this region's nucleotide sequence