Experiment: Tuber-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS00830 and HER17_RS00835 are separated by 570 nucleotides HER17_RS00835 and HER17_RS00840 are separated by 119 nucleotides HER17_RS00840 and HER17_RS00845 are separated by 134 nucleotides
HER17_RS00830: HER17_RS00830 - aquaporin family protein, at 194,132 to 194,971
_RS00830
HER17_RS00835: HER17_RS00835 - septal ring assembly protein ZapB, at 195,542 to 195,781
_RS00835
HER17_RS00840: HER17_RS00840 - ribonuclease E activity regulator RraA, at 195,901 to 196,386
_RS00840
HER17_RS00845: HER17_RS00845 - 1,4-dihydroxy-2-naphthoate polyprenyltransferase, at 196,521 to 197,438
_RS00845
Position (kb) 195
196
197 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 194.945 kb on + strand at 194.946 kb on - strand at 194.972 kb on - strand at 194.994 kb on + strand at 194.994 kb on + strand at 194.994 kb on + strand at 194.994 kb on + strand at 194.994 kb on + strand at 194.995 kb on - strand at 194.995 kb on - strand at 194.995 kb on - strand at 194.995 kb on - strand at 195.004 kb on + strand at 195.005 kb on - strand at 195.005 kb on - strand at 195.005 kb on - strand at 195.005 kb on - strand at 195.010 kb on + strand at 195.010 kb on + strand at 195.010 kb on + strand at 195.010 kb on + strand at 195.041 kb on - strand at 195.050 kb on + strand at 195.050 kb on + strand at 195.177 kb on + strand at 195.177 kb on + strand at 195.178 kb on - strand at 195.180 kb on + strand at 195.181 kb on - strand at 195.210 kb on - strand at 195.210 kb on - strand at 195.216 kb on - strand at 195.292 kb on + strand at 195.292 kb on + strand at 195.293 kb on - strand at 195.319 kb on + strand at 195.320 kb on - strand at 195.325 kb on + strand at 195.325 kb on + strand at 195.325 kb on + strand at 195.325 kb on + strand at 195.326 kb on - strand at 195.330 kb on - strand at 195.370 kb on - strand at 195.370 kb on - strand at 195.370 kb on - strand at 195.392 kb on + strand at 195.392 kb on + strand at 195.392 kb on + strand at 195.392 kb on + strand at 195.393 kb on - strand at 195.393 kb on - strand at 195.393 kb on - strand at 195.393 kb on - strand at 195.403 kb on + strand at 195.439 kb on + strand at 195.440 kb on - strand at 195.596 kb on - strand, within HER17_RS00835 at 195.779 kb on + strand at 195.830 kb on + strand at 195.831 kb on - strand at 195.831 kb on - strand at 195.877 kb on - strand at 195.899 kb on + strand at 195.900 kb on - strand at 195.900 kb on - strand at 195.900 kb on - strand at 195.902 kb on + strand at 195.933 kb on + strand at 195.933 kb on + strand at 195.933 kb on + strand at 195.933 kb on + strand at 195.934 kb on - strand at 195.943 kb on - strand at 195.953 kb on + strand, within HER17_RS00840 at 195.953 kb on + strand, within HER17_RS00840 at 195.953 kb on + strand, within HER17_RS00840 at 196.300 kb on - strand, within HER17_RS00840 at 196.314 kb on + strand, within HER17_RS00840 at 196.315 kb on - strand, within HER17_RS00840 at 196.356 kb on + strand at 196.357 kb on - strand at 196.374 kb on + strand at 196.380 kb on - strand at 196.380 kb on - strand at 196.386 kb on + strand at 196.392 kb on + strand at 196.421 kb on + strand at 196.421 kb on + strand at 196.421 kb on + strand at 196.421 kb on + strand at 196.421 kb on + strand at 196.422 kb on - strand at 196.422 kb on - strand at 196.422 kb on - strand at 196.422 kb on - strand at 196.422 kb on - strand at 196.422 kb on - strand at 196.422 kb on - strand at 196.423 kb on + strand at 196.423 kb on + strand at 196.424 kb on - strand at 196.424 kb on - strand at 196.480 kb on + strand at 196.481 kb on - strand at 196.481 kb on - strand at 196.522 kb on + strand at 196.530 kb on + strand at 196.531 kb on - strand at 196.630 kb on + strand, within HER17_RS00845 at 196.631 kb on - strand, within HER17_RS00845 at 196.631 kb on - strand, within HER17_RS00845 at 196.631 kb on - strand, within HER17_RS00845 at 196.696 kb on + strand, within HER17_RS00845 at 196.697 kb on - strand, within HER17_RS00845 at 196.697 kb on - strand, within HER17_RS00845 at 196.697 kb on - strand, within HER17_RS00845 at 196.697 kb on - strand, within HER17_RS00845 at 196.753 kb on + strand, within HER17_RS00845 at 196.808 kb on + strand, within HER17_RS00845 at 196.808 kb on + strand, within HER17_RS00845 at 196.808 kb on + strand, within HER17_RS00845 at 196.863 kb on + strand, within HER17_RS00845 at 196.863 kb on + strand, within HER17_RS00845 at 196.885 kb on - strand, within HER17_RS00845 at 196.922 kb on - strand, within HER17_RS00845 at 196.922 kb on - strand, within HER17_RS00845 at 196.924 kb on + strand, within HER17_RS00845 at 196.924 kb on + strand, within HER17_RS00845 at 196.925 kb on - strand, within HER17_RS00845 at 196.925 kb on - strand, within HER17_RS00845 at 196.925 kb on - strand, within HER17_RS00845 at 196.940 kb on + strand, within HER17_RS00845 at 196.987 kb on + strand, within HER17_RS00845 at 196.987 kb on + strand, within HER17_RS00845 at 196.993 kb on + strand, within HER17_RS00845 at 196.994 kb on - strand, within HER17_RS00845 at 197.000 kb on + strand, within HER17_RS00845 at 197.001 kb on - strand, within HER17_RS00845 at 197.012 kb on + strand, within HER17_RS00845 at 197.013 kb on - strand, within HER17_RS00845 at 197.014 kb on + strand, within HER17_RS00845 at 197.014 kb on + strand, within HER17_RS00845 at 197.014 kb on + strand, within HER17_RS00845 at 197.014 kb on + strand, within HER17_RS00845 at 197.015 kb on - strand, within HER17_RS00845 at 197.015 kb on - strand, within HER17_RS00845 at 197.015 kb on - strand, within HER17_RS00845 at 197.015 kb on - strand, within HER17_RS00845 at 197.015 kb on - strand, within HER17_RS00845 at 197.015 kb on - strand, within HER17_RS00845 at 197.066 kb on + strand, within HER17_RS00845 at 197.066 kb on + strand, within HER17_RS00845 at 197.067 kb on - strand, within HER17_RS00845 at 197.322 kb on - strand, within HER17_RS00845
Per-strain Table
Position Strand Gene LocusTag Fraction Tuber-Atlantic remove 194,945 + -0.1 194,946 - +0.2 194,972 - -0.8 194,994 + -0.5 194,994 + +0.9 194,994 + +0.3 194,994 + -0.1 194,994 + -0.1 194,995 - -0.8 194,995 - +0.5 194,995 - +1.5 194,995 - -1.7 195,004 + +2.3 195,005 - +0.5 195,005 - +0.2 195,005 - -0.5 195,005 - -0.3 195,010 + -1.5 195,010 + -0.1 195,010 + +1.1 195,010 + -0.4 195,041 - -1.0 195,050 + -1.0 195,050 + +0.5 195,177 + +1.5 195,177 + +0.2 195,178 - -1.2 195,180 + -0.6 195,181 - +0.3 195,210 - -1.1 195,210 - +0.0 195,216 - +0.8 195,292 + -0.2 195,292 + +0.3 195,293 - -0.7 195,319 + +0.0 195,320 - +1.6 195,325 + -1.1 195,325 + -1.5 195,325 + -2.5 195,325 + -1.1 195,326 - +1.2 195,330 - -0.4 195,370 - -1.8 195,370 - +0.4 195,370 - -0.3 195,392 + -0.3 195,392 + +0.5 195,392 + -0.6 195,392 + -0.5 195,393 - -1.1 195,393 - +0.8 195,393 - -0.2 195,393 - -0.3 195,403 + -1.0 195,439 + +0.8 195,440 - -0.3 195,596 - HER17_RS00835 0.23 +1.2 195,779 + -0.3 195,830 + -0.0 195,831 - -0.3 195,831 - +1.5 195,877 - +1.1 195,899 + +1.5 195,900 - +1.5 195,900 - -0.9 195,900 - +0.3 195,902 + +0.3 195,933 + +2.5 195,933 + +1.5 195,933 + -1.6 195,933 + +1.8 195,934 - +0.8 195,943 - -0.2 195,953 + HER17_RS00840 0.11 -0.6 195,953 + HER17_RS00840 0.11 -1.0 195,953 + HER17_RS00840 0.11 -1.7 196,300 - HER17_RS00840 0.82 +4.1 196,314 + HER17_RS00840 0.85 -2.1 196,315 - HER17_RS00840 0.85 -0.5 196,356 + -2.0 196,357 - +0.6 196,374 + -0.5 196,380 - -1.8 196,380 - -1.3 196,386 + -0.1 196,392 + +0.3 196,421 + -0.5 196,421 + -0.5 196,421 + +0.3 196,421 + -0.1 196,421 + -1.2 196,422 - +1.9 196,422 - -1.3 196,422 - -0.2 196,422 - -0.5 196,422 - -2.2 196,422 - +1.5 196,422 - -2.2 196,423 + -0.4 196,423 + -2.4 196,424 - +2.5 196,424 - -0.5 196,480 + +1.1 196,481 - +0.8 196,481 - -0.8 196,522 + +0.4 196,530 + -2.1 196,531 - -1.6 196,630 + HER17_RS00845 0.12 -2.1 196,631 - HER17_RS00845 0.12 -0.4 196,631 - HER17_RS00845 0.12 -2.0 196,631 - HER17_RS00845 0.12 +3.5 196,696 + HER17_RS00845 0.19 -1.3 196,697 - HER17_RS00845 0.19 +0.5 196,697 - HER17_RS00845 0.19 +1.5 196,697 - HER17_RS00845 0.19 -2.0 196,697 - HER17_RS00845 0.19 -1.6 196,753 + HER17_RS00845 0.25 -0.8 196,808 + HER17_RS00845 0.31 -0.1 196,808 + HER17_RS00845 0.31 -0.5 196,808 + HER17_RS00845 0.31 -0.1 196,863 + HER17_RS00845 0.37 -0.5 196,863 + HER17_RS00845 0.37 -2.2 196,885 - HER17_RS00845 0.40 -2.9 196,922 - HER17_RS00845 0.44 +0.5 196,922 - HER17_RS00845 0.44 -0.2 196,924 + HER17_RS00845 0.44 -1.2 196,924 + HER17_RS00845 0.44 -0.5 196,925 - HER17_RS00845 0.44 -0.8 196,925 - HER17_RS00845 0.44 -0.2 196,925 - HER17_RS00845 0.44 -0.7 196,940 + HER17_RS00845 0.46 -2.0 196,987 + HER17_RS00845 0.51 -0.6 196,987 + HER17_RS00845 0.51 -1.3 196,993 + HER17_RS00845 0.51 -1.1 196,994 - HER17_RS00845 0.52 -1.2 197,000 + HER17_RS00845 0.52 -0.6 197,001 - HER17_RS00845 0.52 -2.8 197,012 + HER17_RS00845 0.53 -1.0 197,013 - HER17_RS00845 0.54 +0.2 197,014 + HER17_RS00845 0.54 -2.7 197,014 + HER17_RS00845 0.54 -0.5 197,014 + HER17_RS00845 0.54 -1.0 197,014 + HER17_RS00845 0.54 +0.8 197,015 - HER17_RS00845 0.54 -3.0 197,015 - HER17_RS00845 0.54 -0.7 197,015 - HER17_RS00845 0.54 -1.0 197,015 - HER17_RS00845 0.54 -1.8 197,015 - HER17_RS00845 0.54 +0.1 197,015 - HER17_RS00845 0.54 -1.5 197,066 + HER17_RS00845 0.59 -0.3 197,066 + HER17_RS00845 0.59 -1.8 197,067 - HER17_RS00845 0.59 -0.8 197,322 - HER17_RS00845 0.87 -0.6
Or see this region's nucleotide sequence