Experiment: Tuber-Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS00825 and HER17_RS00830 are separated by 53 nucleotides HER17_RS00830 and HER17_RS00835 are separated by 570 nucleotides HER17_RS00835 and HER17_RS00840 are separated by 119 nucleotides
HER17_RS00825: HER17_RS00825 - glycerol kinase GlpK, at 192,567 to 194,078
_RS00825
HER17_RS00830: HER17_RS00830 - aquaporin family protein, at 194,132 to 194,971
_RS00830
HER17_RS00835: HER17_RS00835 - septal ring assembly protein ZapB, at 195,542 to 195,781
_RS00835
HER17_RS00840: HER17_RS00840 - ribonuclease E activity regulator RraA, at 195,901 to 196,386
_RS00840
Position (kb) 194
195 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 193.174 kb on + strand, within HER17_RS00825 at 193.178 kb on + strand, within HER17_RS00825 at 193.178 kb on + strand, within HER17_RS00825 at 193.178 kb on + strand, within HER17_RS00825 at 193.178 kb on + strand, within HER17_RS00825 at 193.279 kb on + strand, within HER17_RS00825 at 193.358 kb on + strand, within HER17_RS00825 at 193.359 kb on - strand, within HER17_RS00825 at 193.365 kb on - strand, within HER17_RS00825 at 193.402 kb on + strand, within HER17_RS00825 at 193.583 kb on + strand, within HER17_RS00825 at 193.669 kb on + strand, within HER17_RS00825 at 193.670 kb on - strand, within HER17_RS00825 at 193.670 kb on - strand, within HER17_RS00825 at 193.705 kb on + strand, within HER17_RS00825 at 193.706 kb on - strand, within HER17_RS00825 at 193.706 kb on - strand, within HER17_RS00825 at 193.778 kb on + strand, within HER17_RS00825 at 193.778 kb on + strand, within HER17_RS00825 at 193.780 kb on + strand, within HER17_RS00825 at 193.780 kb on + strand, within HER17_RS00825 at 193.780 kb on + strand, within HER17_RS00825 at 193.780 kb on + strand, within HER17_RS00825 at 193.781 kb on - strand, within HER17_RS00825 at 193.810 kb on - strand, within HER17_RS00825 at 193.812 kb on + strand, within HER17_RS00825 at 193.812 kb on + strand, within HER17_RS00825 at 193.812 kb on + strand, within HER17_RS00825 at 193.813 kb on - strand, within HER17_RS00825 at 193.813 kb on - strand, within HER17_RS00825 at 193.813 kb on - strand, within HER17_RS00825 at 193.813 kb on - strand, within HER17_RS00825 at 193.813 kb on - strand, within HER17_RS00825 at 193.813 kb on - strand, within HER17_RS00825 at 193.839 kb on - strand, within HER17_RS00825 at 193.957 kb on + strand at 194.013 kb on + strand at 194.059 kb on + strand at 194.060 kb on - strand at 194.078 kb on + strand at 194.079 kb on - strand at 194.110 kb on + strand at 194.111 kb on - strand at 194.155 kb on + strand at 194.156 kb on - strand at 194.271 kb on + strand, within HER17_RS00830 at 194.271 kb on + strand, within HER17_RS00830 at 194.272 kb on - strand, within HER17_RS00830 at 194.272 kb on - strand, within HER17_RS00830 at 194.272 kb on - strand, within HER17_RS00830 at 194.456 kb on - strand, within HER17_RS00830 at 194.531 kb on - strand, within HER17_RS00830 at 194.605 kb on + strand, within HER17_RS00830 at 194.605 kb on + strand, within HER17_RS00830 at 194.605 kb on + strand, within HER17_RS00830 at 194.605 kb on + strand, within HER17_RS00830 at 194.606 kb on - strand, within HER17_RS00830 at 194.606 kb on - strand, within HER17_RS00830 at 194.606 kb on - strand, within HER17_RS00830 at 194.653 kb on - strand, within HER17_RS00830 at 194.700 kb on + strand, within HER17_RS00830 at 194.700 kb on + strand, within HER17_RS00830 at 194.701 kb on - strand, within HER17_RS00830 at 194.701 kb on - strand, within HER17_RS00830 at 194.701 kb on - strand, within HER17_RS00830 at 194.749 kb on + strand, within HER17_RS00830 at 194.749 kb on + strand, within HER17_RS00830 at 194.749 kb on + strand, within HER17_RS00830 at 194.797 kb on - strand, within HER17_RS00830 at 194.797 kb on - strand, within HER17_RS00830 at 194.834 kb on + strand, within HER17_RS00830 at 194.834 kb on + strand, within HER17_RS00830 at 194.834 kb on + strand, within HER17_RS00830 at 194.834 kb on + strand, within HER17_RS00830 at 194.834 kb on + strand, within HER17_RS00830 at 194.834 kb on + strand, within HER17_RS00830 at 194.835 kb on - strand, within HER17_RS00830 at 194.835 kb on - strand, within HER17_RS00830 at 194.835 kb on - strand, within HER17_RS00830 at 194.945 kb on + strand at 194.946 kb on - strand at 194.972 kb on - strand at 194.994 kb on + strand at 194.994 kb on + strand at 194.994 kb on + strand at 194.994 kb on + strand at 194.994 kb on + strand at 194.995 kb on - strand at 194.995 kb on - strand at 194.995 kb on - strand at 194.995 kb on - strand at 195.004 kb on + strand at 195.005 kb on - strand at 195.005 kb on - strand at 195.005 kb on - strand at 195.005 kb on - strand at 195.010 kb on + strand at 195.010 kb on + strand at 195.010 kb on + strand at 195.010 kb on + strand at 195.041 kb on - strand at 195.050 kb on + strand at 195.050 kb on + strand at 195.177 kb on + strand at 195.177 kb on + strand at 195.178 kb on - strand at 195.180 kb on + strand at 195.181 kb on - strand at 195.210 kb on - strand at 195.210 kb on - strand at 195.216 kb on - strand at 195.292 kb on + strand at 195.292 kb on + strand at 195.293 kb on - strand at 195.319 kb on + strand at 195.320 kb on - strand at 195.325 kb on + strand at 195.325 kb on + strand at 195.325 kb on + strand at 195.325 kb on + strand at 195.326 kb on - strand at 195.330 kb on - strand at 195.370 kb on - strand at 195.370 kb on - strand at 195.370 kb on - strand at 195.392 kb on + strand at 195.392 kb on + strand at 195.392 kb on + strand at 195.392 kb on + strand at 195.393 kb on - strand at 195.393 kb on - strand at 195.393 kb on - strand at 195.393 kb on - strand at 195.403 kb on + strand at 195.439 kb on + strand at 195.440 kb on - strand at 195.596 kb on - strand, within HER17_RS00835 at 195.779 kb on + strand at 195.830 kb on + strand at 195.831 kb on - strand at 195.831 kb on - strand at 195.877 kb on - strand at 195.899 kb on + strand at 195.900 kb on - strand at 195.900 kb on - strand at 195.900 kb on - strand at 195.902 kb on + strand at 195.933 kb on + strand at 195.933 kb on + strand at 195.933 kb on + strand at 195.933 kb on + strand at 195.934 kb on - strand at 195.943 kb on - strand at 195.953 kb on + strand, within HER17_RS00840 at 195.953 kb on + strand, within HER17_RS00840 at 195.953 kb on + strand, within HER17_RS00840
Per-strain Table
Position Strand Gene LocusTag Fraction Tuber-Atlantic remove 193,174 + HER17_RS00825 0.40 +3.1 193,178 + HER17_RS00825 0.40 +2.9 193,178 + HER17_RS00825 0.40 +0.5 193,178 + HER17_RS00825 0.40 -2.0 193,178 + HER17_RS00825 0.40 +0.9 193,279 + HER17_RS00825 0.47 -0.8 193,358 + HER17_RS00825 0.52 -0.1 193,359 - HER17_RS00825 0.52 -2.1 193,365 - HER17_RS00825 0.53 +1.1 193,402 + HER17_RS00825 0.55 +0.5 193,583 + HER17_RS00825 0.67 -0.5 193,669 + HER17_RS00825 0.73 -1.8 193,670 - HER17_RS00825 0.73 -0.2 193,670 - HER17_RS00825 0.73 -0.8 193,705 + HER17_RS00825 0.75 -0.8 193,706 - HER17_RS00825 0.75 -0.2 193,706 - HER17_RS00825 0.75 -1.1 193,778 + HER17_RS00825 0.80 +0.5 193,778 + HER17_RS00825 0.80 -1.5 193,780 + HER17_RS00825 0.80 +0.8 193,780 + HER17_RS00825 0.80 -0.8 193,780 + HER17_RS00825 0.80 +0.9 193,780 + HER17_RS00825 0.80 +2.1 193,781 - HER17_RS00825 0.80 +0.5 193,810 - HER17_RS00825 0.82 +1.3 193,812 + HER17_RS00825 0.82 -2.0 193,812 + HER17_RS00825 0.82 +0.9 193,812 + HER17_RS00825 0.82 -1.3 193,813 - HER17_RS00825 0.82 +0.8 193,813 - HER17_RS00825 0.82 -1.1 193,813 - HER17_RS00825 0.82 +0.5 193,813 - HER17_RS00825 0.82 +0.5 193,813 - HER17_RS00825 0.82 -0.3 193,813 - HER17_RS00825 0.82 -1.1 193,839 - HER17_RS00825 0.84 +0.4 193,957 + -0.5 194,013 + +0.2 194,059 + -0.2 194,060 - -0.8 194,078 + -0.8 194,079 - -0.3 194,110 + +0.1 194,111 - -1.3 194,155 + -0.1 194,156 - +0.3 194,271 + HER17_RS00830 0.17 +2.5 194,271 + HER17_RS00830 0.17 +0.5 194,272 - HER17_RS00830 0.17 -1.1 194,272 - HER17_RS00830 0.17 +1.2 194,272 - HER17_RS00830 0.17 -0.9 194,456 - HER17_RS00830 0.39 +0.2 194,531 - HER17_RS00830 0.47 -2.0 194,605 + HER17_RS00830 0.56 +1.5 194,605 + HER17_RS00830 0.56 +1.0 194,605 + HER17_RS00830 0.56 +0.9 194,605 + HER17_RS00830 0.56 -0.1 194,606 - HER17_RS00830 0.56 -0.1 194,606 - HER17_RS00830 0.56 -0.5 194,606 - HER17_RS00830 0.56 -1.5 194,653 - HER17_RS00830 0.62 +0.9 194,700 + HER17_RS00830 0.68 -1.7 194,700 + HER17_RS00830 0.68 +0.1 194,701 - HER17_RS00830 0.68 +1.5 194,701 - HER17_RS00830 0.68 -1.5 194,701 - HER17_RS00830 0.68 +2.3 194,749 + HER17_RS00830 0.73 -0.1 194,749 + HER17_RS00830 0.73 +0.8 194,749 + HER17_RS00830 0.73 +0.1 194,797 - HER17_RS00830 0.79 -0.7 194,797 - HER17_RS00830 0.79 +2.8 194,834 + HER17_RS00830 0.84 +0.7 194,834 + HER17_RS00830 0.84 -0.9 194,834 + HER17_RS00830 0.84 -0.2 194,834 + HER17_RS00830 0.84 -1.1 194,834 + HER17_RS00830 0.84 -0.3 194,834 + HER17_RS00830 0.84 +0.2 194,835 - HER17_RS00830 0.84 +1.1 194,835 - HER17_RS00830 0.84 -0.8 194,835 - HER17_RS00830 0.84 -0.1 194,945 + -0.1 194,946 - +0.2 194,972 - -0.8 194,994 + -0.5 194,994 + +0.9 194,994 + +0.3 194,994 + -0.1 194,994 + -0.1 194,995 - -0.8 194,995 - +0.5 194,995 - +1.5 194,995 - -1.7 195,004 + +2.3 195,005 - +0.5 195,005 - +0.2 195,005 - -0.5 195,005 - -0.3 195,010 + -1.5 195,010 + -0.1 195,010 + +1.1 195,010 + -0.4 195,041 - -1.0 195,050 + -1.0 195,050 + +0.5 195,177 + +1.5 195,177 + +0.2 195,178 - -1.2 195,180 + -0.6 195,181 - +0.3 195,210 - -1.1 195,210 - +0.0 195,216 - +0.8 195,292 + -0.2 195,292 + +0.3 195,293 - -0.7 195,319 + +0.0 195,320 - +1.6 195,325 + -1.1 195,325 + -1.5 195,325 + -2.5 195,325 + -1.1 195,326 - +1.2 195,330 - -0.4 195,370 - -1.8 195,370 - +0.4 195,370 - -0.3 195,392 + -0.3 195,392 + +0.5 195,392 + -0.6 195,392 + -0.5 195,393 - -1.1 195,393 - +0.8 195,393 - -0.2 195,393 - -0.3 195,403 + -1.0 195,439 + +0.8 195,440 - -0.3 195,596 - HER17_RS00835 0.23 +1.2 195,779 + -0.3 195,830 + -0.0 195,831 - -0.3 195,831 - +1.5 195,877 - +1.1 195,899 + +1.5 195,900 - +1.5 195,900 - -0.9 195,900 - +0.3 195,902 + +0.3 195,933 + +2.5 195,933 + +1.5 195,933 + -1.6 195,933 + +1.8 195,934 - +0.8 195,943 - -0.2 195,953 + HER17_RS00840 0.11 -0.6 195,953 + HER17_RS00840 0.11 -1.0 195,953 + HER17_RS00840 0.11 -1.7
Or see this region's nucleotide sequence