Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS00590

Experiment: Tuber-Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Tuber-Atlantic
138,899	+				+1.5
138,963	+		HER17_RS21895	0.11	-1.3
138,964	-		HER17_RS21895	0.11	-1.4
138,969	+		HER17_RS21895	0.14	+1.7
138,969	+		HER17_RS21895	0.14	+0.0
138,970	-		HER17_RS21895	0.15	-0.4
138,970	-		HER17_RS21895	0.15	-0.0
138,970	-		HER17_RS21895	0.15	+0.5
139,027	-		HER17_RS21895	0.48	-0.2
139,128	+				-1.0
139,128	+				-0.5
139,128	+				-0.4
139,129	-				-0.6
139,129	-				+0.2
139,129	-				+0.3
139,129	-				-0.3
139,129	-				+2.8
139,129	-				+1.2
139,143	+				+0.8
139,147	+				-0.7
139,148	-				-0.7
139,148	-				+0.1
139,173	-				+0.0
139,178	+				+0.4
139,285	+				+0.5
139,285	+				+1.0
139,286	-				+1.0
139,286	-				+1.3
139,286	-				-1.3
139,286	-				-0.7
139,286	-				-1.1
139,298	-				+0.0
139,311	-		HER17_RS00585	0.11	+1.3
139,359	+		HER17_RS00585	0.18	+0.5
139,359	+		HER17_RS00585	0.18	-0.6
139,360	-		HER17_RS00585	0.18	-0.2
139,360	-		HER17_RS00585	0.18	-0.0
139,372	+		HER17_RS00585	0.20	-0.4
139,372	+		HER17_RS00585	0.20	+2.5
139,373	-		HER17_RS00585	0.20	-0.3
139,373	-		HER17_RS00585	0.20	+2.6
139,405	+		HER17_RS00585	0.25	+0.5
139,405	+		HER17_RS00585	0.25	+0.6
139,405	+		HER17_RS00585	0.25	+0.9
139,408	+		HER17_RS00585	0.25	-0.5
139,408	+		HER17_RS00585	0.25	-0.2
139,408	+		HER17_RS00585	0.25	+1.3
139,408	+		HER17_RS00585	0.25	-0.7
139,409	-		HER17_RS00585	0.25	+0.8
139,416	+		HER17_RS00585	0.26	+1.2
139,416	+		HER17_RS00585	0.26	+0.3
139,416	+		HER17_RS00585	0.26	-1.7
139,417	-		HER17_RS00585	0.26	-0.1
139,421	-		HER17_RS00585	0.27	+0.7
139,421	-		HER17_RS00585	0.27	-0.5
139,422	+		HER17_RS00585	0.27	+0.0
139,530	+		HER17_RS00585	0.43	-0.7
139,530	+		HER17_RS00585	0.43	-2.2
139,531	-		HER17_RS00585	0.43	+0.1
139,563	+		HER17_RS00585	0.47	+0.9
139,563	+		HER17_RS00585	0.47	-0.4
139,564	-		HER17_RS00585	0.47	+0.8
139,564	-		HER17_RS00585	0.47	+0.6
139,564	-		HER17_RS00585	0.47	-0.8
139,594	-		HER17_RS00585	0.52	-1.6
139,599	+		HER17_RS00585	0.52	+0.4
139,608	+		HER17_RS00585	0.54	-0.6
139,609	-		HER17_RS00585	0.54	-0.1
139,609	-		HER17_RS00585	0.54	+1.4
139,609	-		HER17_RS00585	0.54	-0.5
139,635	-		HER17_RS00585	0.58	-1.0
139,675	+		HER17_RS00585	0.63	+0.3
139,679	+		HER17_RS00585	0.64	-1.8
139,680	-		HER17_RS00585	0.64	-2.1
139,754	+		HER17_RS00585	0.75	-0.3
139,792	-		HER17_RS00585	0.80	-0.5
139,834	-		HER17_RS00585	0.86	-0.6
139,844	+		HER17_RS00585	0.88	-1.5
139,845	-		HER17_RS00585	0.88	-0.9
139,845	-		HER17_RS00585	0.88	-0.7
139,845	-		HER17_RS00585	0.88	-0.1
139,852	+		HER17_RS00585	0.89	+0.2
139,852	+		HER17_RS00585	0.89	-1.0
139,852	+		HER17_RS00585	0.89	-0.8
139,852	+		HER17_RS00585	0.89	+1.1
139,852	+		HER17_RS00585	0.89	-0.8
139,853	-		HER17_RS00585	0.89	-1.0
139,853	-		HER17_RS00585	0.89	+0.5
139,853	-		HER17_RS00585	0.89	-1.8
139,855	-		HER17_RS00585	0.89	+0.9
139,877	+				-0.1
139,877	+				+3.1
139,877	+				-0.5
139,878	-				-0.2
139,881	+				-0.2
139,882	-				-0.1
139,882	-				+1.0
139,882	-				-0.6
139,882	-				+0.1
139,882	-				-0.9
139,948	+		HER17_RS00590	0.12	-1.0
139,948	+		HER17_RS00590	0.12	-2.4
139,948	+		HER17_RS00590	0.12	-1.2
139,948	+		HER17_RS00590	0.12	-0.7
139,949	-		HER17_RS00590	0.12	+0.8
139,992	-		HER17_RS00590	0.21	-2.1
140,072	-		HER17_RS00590	0.39	-1.2
140,072	-		HER17_RS00590	0.39	-1.1
140,072	-		HER17_RS00590	0.39	-1.4
140,086	+		HER17_RS00590	0.42	+0.0
140,087	-		HER17_RS00590	0.42	-0.3
140,164	+		HER17_RS00590	0.59	-0.1
140,168	-		HER17_RS00590	0.60	+7.2
140,168	-		HER17_RS00590	0.60	-0.8
140,168	-		HER17_RS00590	0.60	-1.1
140,199	+		HER17_RS00590	0.67	-1.1
140,199	+		HER17_RS00590	0.67	-0.7
140,199	+		HER17_RS00590	0.67	-1.7
140,199	+		HER17_RS00590	0.67	-0.6
140,200	-		HER17_RS00590	0.67	-1.5
140,207	+		HER17_RS00590	0.69	-1.1
140,207	+		HER17_RS00590	0.69	+0.3
140,207	+		HER17_RS00590	0.69	+0.5
140,207	+		HER17_RS00590	0.69	-1.2
140,208	-		HER17_RS00590	0.69	-0.8
140,208	-		HER17_RS00590	0.69	-2.3
140,208	-		HER17_RS00590	0.69	-2.4
140,208	-		HER17_RS00590	0.69	-2.4
140,211	+		HER17_RS00590	0.70	+1.5
140,211	+		HER17_RS00590	0.70	+0.5
140,212	-		HER17_RS00590	0.70	+0.5
140,228	-		HER17_RS00590	0.74	-2.2
140,237	+		HER17_RS00590	0.75	-1.0
140,238	-		HER17_RS00590	0.76	+0.7
140,258	+		HER17_RS00590	0.80	-1.3
140,258	+		HER17_RS00590	0.80	-0.3
140,259	-		HER17_RS00590	0.80	-2.0
140,282	-		HER17_RS00590	0.85	-1.2
140,289	+		HER17_RS00590	0.87	-0.8
140,289	+		HER17_RS00590	0.87	-0.5
140,290	-		HER17_RS00590	0.87	-1.2
140,290	-		HER17_RS00590	0.87	-1.2
140,290	-		HER17_RS00590	0.87	-0.4
140,290	-		HER17_RS00590	0.87	-1.7
140,293	+		HER17_RS00590	0.88	-1.2
140,293	+		HER17_RS00590	0.88	-1.8
140,293	+		HER17_RS00590	0.88	-1.7
140,293	+		HER17_RS00590	0.88	-1.1
140,293	+		HER17_RS00590	0.88	-1.7
140,293	+		HER17_RS00590	0.88	-0.8
140,293	+		HER17_RS00590	0.88	-0.3
140,294	-		HER17_RS00590	0.88	-2.0
140,294	-		HER17_RS00590	0.88	-0.5
140,294	-		HER17_RS00590	0.88	-1.1
140,294	-		HER17_RS00590	0.88	-0.7
140,294	-		HER17_RS00590	0.88	-0.3
140,294	-		HER17_RS00590	0.88	-0.8
140,294	-		HER17_RS00590	0.88	-0.6
140,294	-		HER17_RS00590	0.88	-1.5
140,295	+		HER17_RS00590	0.88	-0.7
140,295	+		HER17_RS00590	0.88	-1.0
140,295	+		HER17_RS00590	0.88	-1.2
140,295	+		HER17_RS00590	0.88	-1.5
140,295	+		HER17_RS00590	0.88	-1.5
140,295	+		HER17_RS00590	0.88	-1.5
140,295	+		HER17_RS00590	0.88	-1.1
140,295	+		HER17_RS00590	0.88	-0.2
140,295	+		HER17_RS00590	0.88	+4.4
140,296	-		HER17_RS00590	0.89	-2.8
140,296	-		HER17_RS00590	0.89	-1.4
140,296	-		HER17_RS00590	0.89	-0.7
140,296	-		HER17_RS00590	0.89	-2.7
140,296	-		HER17_RS00590	0.89	-2.0
140,379	+				-1.2
140,380	-				-0.1
140,400	+				+0.9
140,400	+				-0.2
140,422	+				+0.8
140,422	+				-0.1
140,423	-				+0.8
140,423	-				+0.7
140,430	+				-0.3
140,431	-				+0.9
140,431	-				-0.7
140,473	-				+3.5
140,473	-				-1.7
140,491	-		HER17_RS00595	0.12	-1.3
140,681	+		HER17_RS00595	0.80	-1.0
140,682	-		HER17_RS00595	0.80	-1.1
140,734	+				+1.1
140,734	+				-0.1
140,735	-				-1.1
140,743	+				-0.1
140,744	-				+0.5
140,753	-				-0.4
140,759	+				-1.5
140,759	+				-0.3
140,820	-				-1.3
140,837	+				-1.5
140,837	+				-0.3
140,837	+				+0.3
140,838	-				+0.5
140,838	-				+1.5
140,838	-				-0.8
140,838	-				+0.1
140,916	-		HER17_RS00600	0.35	+0.1
140,931	+		HER17_RS00600	0.40	-0.2
140,931	+		HER17_RS00600	0.40	+0.3
140,932	-		HER17_RS00600	0.40	-0.5
140,932	-		HER17_RS00600	0.40	-0.2
140,932	-		HER17_RS00600	0.40	+1.5
140,965	-		HER17_RS00600	0.51	+0.0
140,966	+		HER17_RS00600	0.52	-0.3
140,966	+		HER17_RS00600	0.52	-0.4
140,967	-		HER17_RS00600	0.52	-1.3
140,967	-		HER17_RS00600	0.52	-0.0
140,967	-		HER17_RS00600	0.52	-0.1
140,968	+		HER17_RS00600	0.52	+1.5
140,989	-		HER17_RS00600	0.60	+0.7
141,040	+		HER17_RS00600	0.77	+0.1
141,055	+		HER17_RS00600	0.82	+0.5
141,055	+		HER17_RS00600	0.82	+0.3
141,056	-		HER17_RS00600	0.82	+1.5
141,056	-		HER17_RS00600	0.82	+0.7
141,102	-				-1.1
141,103	+				-2.0
141,103	+				+0.5
141,104	-				+0.1
141,104	-				-1.1
141,264	+		HER17_RS00605	0.67	+0.5
141,280	+		HER17_RS00605	0.74	-0.1
141,283	+		HER17_RS00605	0.75	+1.5
141,283	+		HER17_RS00605	0.75	+0.9
141,283	+		HER17_RS00605	0.75	-0.5
141,321	+				-0.1
141,321	+				+1.5
141,324	+				+0.7
141,336	+				-0.1
141,342	+				-1.1