Strain Fitness in Escherichia coli BW25113 around b3322

Experiment: 2-nitrobenzenesulfonyl fluoride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrplC and rpsJ are separated by 32 nucleotidesrpsJ and pioO are separated by 237 nucleotidespioO and gspA are separated by 1 nucleotides b3320: rplC - 50S ribosomal protein L3 (NCBI), at 3,450,319 to 3,450,948 rplC b3321: rpsJ - 30S ribosomal protein S10 (NCBI), at 3,450,981 to 3,451,292 rpsJ b3322: pioO - part of gsp divergon involved in type II protein secretion (NCBI), at 3,451,530 to 3,451,949 pioO b3323: gspA - general secretory pathway component, cryptic (NCBI), at 3,451,951 to 3,453,420 gspA Position (kb) 3451 3452Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3451.443 kb on - strandat 3451.511 kb on + strandat 3451.511 kb on + strandat 3451.576 kb on - strand, within pioOat 3451.576 kb on - strand, within pioOat 3451.576 kb on - strand, within pioOat 3451.583 kb on + strand, within pioOat 3451.583 kb on + strand, within pioOat 3451.601 kb on - strand, within pioOat 3451.624 kb on - strand, within pioOat 3451.626 kb on + strand, within pioOat 3451.633 kb on - strand, within pioOat 3451.635 kb on + strand, within pioOat 3451.635 kb on + strand, within pioOat 3451.643 kb on - strand, within pioOat 3451.643 kb on - strand, within pioOat 3451.643 kb on - strand, within pioOat 3451.643 kb on - strand, within pioOat 3451.662 kb on + strand, within pioOat 3451.668 kb on - strand, within pioOat 3451.668 kb on - strand, within pioOat 3451.716 kb on - strand, within pioOat 3451.716 kb on - strand, within pioOat 3451.735 kb on - strand, within pioOat 3451.747 kb on + strand, within pioOat 3451.748 kb on + strand, within pioOat 3451.761 kb on - strand, within pioOat 3451.783 kb on + strand, within pioOat 3451.783 kb on + strand, within pioOat 3451.791 kb on - strand, within pioOat 3451.791 kb on - strand, within pioOat 3451.791 kb on - strand, within pioOat 3451.791 kb on - strand, within pioOat 3451.807 kb on + strand, within pioOat 3451.809 kb on + strand, within pioOat 3451.809 kb on + strand, within pioOat 3451.836 kb on - strand, within pioOat 3451.838 kb on - strand, within pioOat 3451.866 kb on - strand, within pioOat 3451.870 kb on - strand, within pioOat 3451.872 kb on + strand, within pioOat 3451.873 kb on - strand, within pioOat 3451.902 kb on - strand, within pioOat 3451.902 kb on - strand, within pioOat 3451.903 kb on - strand, within pioOat 3451.917 kb on - strandat 3451.927 kb on - strandat 3451.933 kb on + strandat 3451.965 kb on - strandat 3451.998 kb on + strandat 3452.005 kb on - strandat 3452.009 kb on + strandat 3452.009 kb on + strandat 3452.011 kb on + strandat 3452.016 kb on + strandat 3452.017 kb on - strandat 3452.019 kb on - strandat 3452.022 kb on + strandat 3452.022 kb on + strandat 3452.022 kb on - strandat 3452.026 kb on - strandat 3452.026 kb on - strandat 3452.033 kb on - strandat 3452.036 kb on - strandat 3452.040 kb on - strandat 3452.040 kb on - strandat 3452.044 kb on + strandat 3452.130 kb on - strand, within gspAat 3452.133 kb on - strand, within gspAat 3452.187 kb on + strand, within gspAat 3452.216 kb on + strand, within gspAat 3452.219 kb on - strand, within gspAat 3452.222 kb on - strand, within gspAat 3452.222 kb on - strand, within gspAat 3452.222 kb on - strand, within gspAat 3452.222 kb on - strand, within gspAat 3452.227 kb on - strand, within gspAat 3452.243 kb on + strand, within gspAat 3452.251 kb on - strand, within gspAat 3452.266 kb on + strand, within gspAat 3452.275 kb on - strand, within gspAat 3452.294 kb on - strand, within gspAat 3452.294 kb on - strand, within gspAat 3452.321 kb on + strand, within gspAat 3452.343 kb on - strand, within gspAat 3452.343 kb on - strand, within gspAat 3452.461 kb on + strand, within gspAat 3452.461 kb on + strand, within gspAat 3452.465 kb on - strand, within gspAat 3452.469 kb on - strand, within gspAat 3452.511 kb on - strand, within gspAat 3452.519 kb on - strand, within gspAat 3452.519 kb on - strand, within gspAat 3452.529 kb on - strand, within gspAat 3452.530 kb on + strand, within gspAat 3452.530 kb on + strand, within gspAat 3452.543 kb on + strand, within gspAat 3452.554 kb on + strand, within gspAat 3452.564 kb on + strand, within gspAat 3452.564 kb on + strand, within gspAat 3452.572 kb on - strand, within gspAat 3452.586 kb on + strand, within gspAat 3452.595 kb on - strand, within gspAat 3452.595 kb on - strand, within gspAat 3452.599 kb on - strand, within gspAat 3452.606 kb on + strand, within gspAat 3452.614 kb on - strand, within gspAat 3452.626 kb on + strand, within gspAat 3452.631 kb on + strand, within gspAat 3452.639 kb on - strand, within gspAat 3452.650 kb on - strand, within gspAat 3452.652 kb on + strand, within gspAat 3452.655 kb on + strand, within gspAat 3452.658 kb on + strand, within gspAat 3452.676 kb on + strand, within gspAat 3452.676 kb on + strand, within gspAat 3452.682 kb on + strand, within gspAat 3452.684 kb on + strand, within gspAat 3452.684 kb on + strand, within gspAat 3452.687 kb on + strand, within gspAat 3452.687 kb on + strand, within gspAat 3452.689 kb on + strand, within gspAat 3452.689 kb on + strand, within gspAat 3452.690 kb on + strand, within gspAat 3452.695 kb on - strand, within gspAat 3452.695 kb on - strand, within gspAat 3452.695 kb on - strand, within gspAat 3452.697 kb on + strand, within gspAat 3452.699 kb on + strand, within gspAat 3452.700 kb on - strand, within gspAat 3452.700 kb on - strand, within gspAat 3452.726 kb on + strand, within gspAat 3452.726 kb on + strand, within gspAat 3452.743 kb on + strand, within gspAat 3452.755 kb on + strand, within gspAat 3452.755 kb on + strand, within gspAat 3452.774 kb on + strand, within gspAat 3452.774 kb on + strand, within gspAat 3452.779 kb on + strand, within gspAat 3452.782 kb on - strand, within gspAat 3452.790 kb on - strand, within gspAat 3452.793 kb on + strand, within gspAat 3452.793 kb on + strand, within gspAat 3452.829 kb on + strand, within gspAat 3452.829 kb on + strand, within gspAat 3452.831 kb on + strand, within gspAat 3452.831 kb on + strand, within gspAat 3452.833 kb on + strand, within gspAat 3452.848 kb on + strand, within gspAat 3452.848 kb on + strand, within gspAat 3452.851 kb on + strand, within gspAat 3452.851 kb on + strand, within gspAat 3452.851 kb on + strand, within gspAat 3452.858 kb on - strand, within gspAat 3452.882 kb on + strand, within gspAat 3452.882 kb on + strand, within gspAat 3452.890 kb on - strand, within gspAat 3452.890 kb on - strand, within gspAat 3452.901 kb on + strand, within gspAat 3452.901 kb on + strand, within gspAat 3452.902 kb on + strand, within gspAat 3452.902 kb on + strand, within gspAat 3452.915 kb on - strand, within gspAat 3452.916 kb on + strand, within gspAat 3452.925 kb on + strand, within gspAat 3452.931 kb on + strand, within gspAat 3452.931 kb on + strand, within gspAat 3452.931 kb on + strand, within gspAat 3452.936 kb on + strand, within gspAat 3452.937 kb on + strand, within gspAat 3452.937 kb on - strand, within gspAat 3452.937 kb on - strand, within gspAat 3452.938 kb on + strand, within gspAat 3452.938 kb on + strand, within gspAat 3452.944 kb on - strand, within gspAat 3452.946 kb on + strand, within gspAat 3452.946 kb on + strand, within gspAat 3452.947 kb on + strand, within gspAat 3452.947 kb on + strand, within gspAat 3452.947 kb on + strand, within gspAat 3452.947 kb on + strand, within gspA

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-nitrobenzenesulfonyl fluoride
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3,451,443 - -0.1
3,451,511 + +0.8
3,451,511 + -0.1
3,451,576 - pioO b3322 0.11 +0.6
3,451,576 - pioO b3322 0.11 -0.3
3,451,576 - pioO b3322 0.11 +0.2
3,451,583 + pioO b3322 0.13 +0.8
3,451,583 + pioO b3322 0.13 -0.3
3,451,601 - pioO b3322 0.17 -0.3
3,451,624 - pioO b3322 0.22 -1.3
3,451,626 + pioO b3322 0.23 +1.0
3,451,633 - pioO b3322 0.25 +0.2
3,451,635 + pioO b3322 0.25 +2.1
3,451,635 + pioO b3322 0.25 +0.4
3,451,643 - pioO b3322 0.27 +1.5
3,451,643 - pioO b3322 0.27 +0.7
3,451,643 - pioO b3322 0.27 +1.3
3,451,643 - pioO b3322 0.27 +0.2
3,451,662 + pioO b3322 0.31 +0.6
3,451,668 - pioO b3322 0.33 +1.4
3,451,668 - pioO b3322 0.33 +0.8
3,451,716 - pioO b3322 0.44 -1.2
3,451,716 - pioO b3322 0.44 +0.0
3,451,735 - pioO b3322 0.49 -1.3
3,451,747 + pioO b3322 0.52 -0.3
3,451,748 + pioO b3322 0.52 +1.2
3,451,761 - pioO b3322 0.55 +0.1
3,451,783 + pioO b3322 0.60 -1.8
3,451,783 + pioO b3322 0.60 +2.1
3,451,791 - pioO b3322 0.62 +1.4
3,451,791 - pioO b3322 0.62 -2.9
3,451,791 - pioO b3322 0.62 +1.2
3,451,791 - pioO b3322 0.62 -2.3
3,451,807 + pioO b3322 0.66 +0.7
3,451,809 + pioO b3322 0.66 +2.1
3,451,809 + pioO b3322 0.66 -0.3
3,451,836 - pioO b3322 0.73 +1.6
3,451,838 - pioO b3322 0.73 -0.8
3,451,866 - pioO b3322 0.80 +0.4
3,451,870 - pioO b3322 0.81 +0.2
3,451,872 + pioO b3322 0.81 +0.1
3,451,873 - pioO b3322 0.82 +1.3
3,451,902 - pioO b3322 0.89 +0.8
3,451,902 - pioO b3322 0.89 +1.1
3,451,903 - pioO b3322 0.89 +0.9
3,451,917 - -0.0
3,451,927 - +1.2
3,451,933 + -0.0
3,451,965 - +1.1
3,451,998 + +1.8
3,452,005 - +0.8
3,452,009 + +1.8
3,452,009 + -0.8
3,452,011 + +1.2
3,452,016 + -0.6
3,452,017 - +1.2
3,452,019 - -0.8
3,452,022 + +0.8
3,452,022 + +0.2
3,452,022 - +0.2
3,452,026 - +2.2
3,452,026 - +1.8
3,452,033 - +0.8
3,452,036 - +0.6
3,452,040 - +0.2
3,452,040 - +0.8
3,452,044 + +0.2
3,452,130 - gspA b3323 0.12 +1.0
3,452,133 - gspA b3323 0.12 +1.5
3,452,187 + gspA b3323 0.16 +0.2
3,452,216 + gspA b3323 0.18 +0.8
3,452,219 - gspA b3323 0.18 +1.2
3,452,222 - gspA b3323 0.18 +0.7
3,452,222 - gspA b3323 0.18 -0.5
3,452,222 - gspA b3323 0.18 -0.5
3,452,222 - gspA b3323 0.18 +0.2
3,452,227 - gspA b3323 0.19 +0.8
3,452,243 + gspA b3323 0.20 -0.9
3,452,251 - gspA b3323 0.20 -0.0
3,452,266 + gspA b3323 0.21 -0.9
3,452,275 - gspA b3323 0.22 +0.4
3,452,294 - gspA b3323 0.23 +0.7
3,452,294 - gspA b3323 0.23 +0.2
3,452,321 + gspA b3323 0.25 +1.1
3,452,343 - gspA b3323 0.27 +0.3
3,452,343 - gspA b3323 0.27 +0.8
3,452,461 + gspA b3323 0.35 +0.8
3,452,461 + gspA b3323 0.35 -0.4
3,452,465 - gspA b3323 0.35 +0.6
3,452,469 - gspA b3323 0.35 -0.0
3,452,511 - gspA b3323 0.38 -0.4
3,452,519 - gspA b3323 0.39 +0.2
3,452,519 - gspA b3323 0.39 +1.2
3,452,529 - gspA b3323 0.39 -0.8
3,452,530 + gspA b3323 0.39 -0.2
3,452,530 + gspA b3323 0.39 -2.3
3,452,543 + gspA b3323 0.40 -1.0
3,452,554 + gspA b3323 0.41 +0.5
3,452,564 + gspA b3323 0.42 -0.8
3,452,564 + gspA b3323 0.42 +1.8
3,452,572 - gspA b3323 0.42 +0.5
3,452,586 + gspA b3323 0.43 +0.2
3,452,595 - gspA b3323 0.44 -1.0
3,452,595 - gspA b3323 0.44 +1.2
3,452,599 - gspA b3323 0.44 +0.7
3,452,606 + gspA b3323 0.45 +0.6
3,452,614 - gspA b3323 0.45 +1.9
3,452,626 + gspA b3323 0.46 +1.1
3,452,631 + gspA b3323 0.46 -0.2
3,452,639 - gspA b3323 0.47 +0.7
3,452,650 - gspA b3323 0.48 -0.8
3,452,652 + gspA b3323 0.48 +0.2
3,452,655 + gspA b3323 0.48 +0.6
3,452,658 + gspA b3323 0.48 +0.2
3,452,676 + gspA b3323 0.49 +0.6
3,452,676 + gspA b3323 0.49 -0.4
3,452,682 + gspA b3323 0.50 +0.7
3,452,684 + gspA b3323 0.50 +0.2
3,452,684 + gspA b3323 0.50 -0.2
3,452,687 + gspA b3323 0.50 -0.8
3,452,687 + gspA b3323 0.50 +0.6
3,452,689 + gspA b3323 0.50 +0.2
3,452,689 + gspA b3323 0.50 +1.2
3,452,690 + gspA b3323 0.50 -0.2
3,452,695 - gspA b3323 0.51 +0.7
3,452,695 - gspA b3323 0.51 +0.5
3,452,695 - gspA b3323 0.51 +0.2
3,452,697 + gspA b3323 0.51 -1.0
3,452,699 + gspA b3323 0.51 -0.7
3,452,700 - gspA b3323 0.51 -0.3
3,452,700 - gspA b3323 0.51 +0.2
3,452,726 + gspA b3323 0.53 +1.0
3,452,726 + gspA b3323 0.53 -0.2
3,452,743 + gspA b3323 0.54 -0.1
3,452,755 + gspA b3323 0.55 +0.7
3,452,755 + gspA b3323 0.55 +1.0
3,452,774 + gspA b3323 0.56 -0.8
3,452,774 + gspA b3323 0.56 -0.3
3,452,779 + gspA b3323 0.56 +1.6
3,452,782 - gspA b3323 0.57 -0.8
3,452,790 - gspA b3323 0.57 +0.2
3,452,793 + gspA b3323 0.57 +0.1
3,452,793 + gspA b3323 0.57 -0.1
3,452,829 + gspA b3323 0.60 +0.8
3,452,829 + gspA b3323 0.60 +0.2
3,452,831 + gspA b3323 0.60 +1.0
3,452,831 + gspA b3323 0.60 -0.0
3,452,833 + gspA b3323 0.60 +2.2
3,452,848 + gspA b3323 0.61 +0.2
3,452,848 + gspA b3323 0.61 -0.5
3,452,851 + gspA b3323 0.61 -0.1
3,452,851 + gspA b3323 0.61 -1.8
3,452,851 + gspA b3323 0.61 +0.4
3,452,858 - gspA b3323 0.62 +2.2
3,452,882 + gspA b3323 0.63 -0.1
3,452,882 + gspA b3323 0.63 +0.8
3,452,890 - gspA b3323 0.64 +0.2
3,452,890 - gspA b3323 0.64 -1.3
3,452,901 + gspA b3323 0.65 -0.0
3,452,901 + gspA b3323 0.65 -0.4
3,452,902 + gspA b3323 0.65 -0.8
3,452,902 + gspA b3323 0.65 -0.4
3,452,915 - gspA b3323 0.66 -0.0
3,452,916 + gspA b3323 0.66 +0.5
3,452,925 + gspA b3323 0.66 -2.3
3,452,931 + gspA b3323 0.67 -0.3
3,452,931 + gspA b3323 0.67 -2.1
3,452,931 + gspA b3323 0.67 -0.6
3,452,936 + gspA b3323 0.67 -1.0
3,452,937 + gspA b3323 0.67 -0.9
3,452,937 - gspA b3323 0.67 +0.8
3,452,937 - gspA b3323 0.67 +1.5
3,452,938 + gspA b3323 0.67 -0.2
3,452,938 + gspA b3323 0.67 +0.3
3,452,944 - gspA b3323 0.68 +0.8
3,452,946 + gspA b3323 0.68 +0.8
3,452,946 + gspA b3323 0.68 +3.4
3,452,947 + gspA b3323 0.68 -0.0
3,452,947 + gspA b3323 0.68 +1.0
3,452,947 + gspA b3323 0.68 +1.5
3,452,947 + gspA b3323 0.68 +3.1

Or see this region's nucleotide sequence