Strain Fitness in Escherichia coli BW25113 around b3262

Experiment: 2-nitrobenzenesulfonyl fluoride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdusB and fis are separated by 25 nucleotidesfis and yhdJ are separated by 85 nucleotidesyhdJ and yhdU are separated by 83 nucleotidesyhdU and envR are separated by 2 nucleotides b3260: dusB - tRNA-dihydrouridine synthase B (NCBI), at 3,408,302 to 3,409,267 dusB b3261: fis - DNA-binding protein Fis (NCBI), at 3,409,293 to 3,409,589 fis b3262: yhdJ - putative methyltransferase (VIMSS), at 3,409,675 to 3,410,559 yhdJ b3263: yhdU - predicted membrane protein (NCBI), at 3,410,643 to 3,410,822 yhdU b3264: envR - DNA-binding transcriptional regulator (NCBI), at 3,410,825 to 3,411,487 envR Position (kb) 3409 3410 3411Strain fitness (log2 ratio) -2 -1 0 1 2at 3408.772 kb on - strand, within dusBat 3408.773 kb on + strand, within dusBat 3408.842 kb on + strand, within dusBat 3408.842 kb on + strand, within dusBat 3408.847 kb on + strand, within dusBat 3408.847 kb on + strand, within dusBat 3408.909 kb on - strand, within dusBat 3408.912 kb on - strand, within dusBat 3408.942 kb on + strand, within dusBat 3408.943 kb on - strand, within dusBat 3408.943 kb on - strand, within dusBat 3408.945 kb on + strand, within dusBat 3408.945 kb on + strand, within dusBat 3408.952 kb on + strand, within dusBat 3408.953 kb on - strand, within dusBat 3408.961 kb on + strand, within dusBat 3408.988 kb on - strand, within dusBat 3408.991 kb on + strand, within dusBat 3409.134 kb on - strand, within dusBat 3409.431 kb on + strand, within fisat 3409.435 kb on - strand, within fisat 3409.442 kb on + strand, within fisat 3409.446 kb on - strand, within fisat 3409.447 kb on + strand, within fisat 3409.450 kb on - strand, within fisat 3409.464 kb on + strand, within fisat 3409.478 kb on + strand, within fisat 3409.493 kb on + strand, within fisat 3409.493 kb on + strand, within fisat 3409.514 kb on + strand, within fisat 3409.524 kb on + strand, within fisat 3409.524 kb on + strand, within fisat 3409.733 kb on + strandat 3409.828 kb on - strand, within yhdJat 3409.873 kb on - strand, within yhdJat 3409.879 kb on + strand, within yhdJat 3409.879 kb on + strand, within yhdJat 3409.895 kb on - strand, within yhdJat 3409.915 kb on + strand, within yhdJat 3409.968 kb on + strand, within yhdJat 3410.048 kb on - strand, within yhdJat 3410.097 kb on + strand, within yhdJat 3410.108 kb on + strand, within yhdJat 3410.168 kb on + strand, within yhdJat 3410.186 kb on - strand, within yhdJat 3410.186 kb on - strand, within yhdJat 3410.316 kb on + strand, within yhdJat 3410.334 kb on - strand, within yhdJat 3410.423 kb on + strand, within yhdJat 3410.460 kb on + strand, within yhdJat 3410.464 kb on + strand, within yhdJat 3410.565 kb on + strandat 3410.565 kb on + strandat 3410.565 kb on + strandat 3410.603 kb on + strandat 3410.613 kb on + strandat 3410.616 kb on - strandat 3410.618 kb on + strandat 3410.629 kb on + strandat 3410.631 kb on - strandat 3410.631 kb on - strandat 3410.633 kb on + strandat 3410.633 kb on + strandat 3410.633 kb on + strandat 3410.636 kb on - strandat 3410.653 kb on + strandat 3410.653 kb on + strandat 3410.654 kb on + strandat 3410.661 kb on - strand, within yhdUat 3410.677 kb on - strand, within yhdUat 3410.678 kb on - strand, within yhdUat 3410.678 kb on - strand, within yhdUat 3410.679 kb on + strand, within yhdUat 3410.693 kb on + strand, within yhdUat 3410.698 kb on + strand, within yhdUat 3410.712 kb on - strand, within yhdUat 3410.716 kb on + strand, within yhdUat 3410.716 kb on + strand, within yhdUat 3410.764 kb on + strand, within yhdUat 3410.764 kb on + strand, within yhdUat 3410.764 kb on + strand, within yhdUat 3410.772 kb on - strand, within yhdUat 3410.772 kb on - strand, within yhdUat 3410.778 kb on + strand, within yhdUat 3410.788 kb on + strand, within yhdUat 3410.788 kb on + strand, within yhdUat 3410.788 kb on + strand, within yhdUat 3410.788 kb on + strand, within yhdUat 3410.880 kb on + strandat 3410.896 kb on + strand, within envRat 3410.901 kb on + strand, within envRat 3410.911 kb on + strand, within envRat 3410.968 kb on - strand, within envRat 3411.043 kb on + strand, within envRat 3411.062 kb on + strand, within envRat 3411.079 kb on + strand, within envRat 3411.114 kb on + strand, within envRat 3411.122 kb on - strand, within envRat 3411.231 kb on - strand, within envRat 3411.243 kb on - strand, within envRat 3411.249 kb on - strand, within envRat 3411.250 kb on - strand, within envRat 3411.250 kb on - strand, within envRat 3411.252 kb on + strand, within envRat 3411.260 kb on - strand, within envRat 3411.260 kb on - strand, within envRat 3411.293 kb on + strand, within envRat 3411.298 kb on - strand, within envRat 3411.298 kb on - strand, within envRat 3411.306 kb on - strand, within envRat 3411.369 kb on - strand, within envRat 3411.397 kb on + strand, within envRat 3411.404 kb on + strand, within envRat 3411.410 kb on + strand, within envRat 3411.442 kb on + strandat 3411.442 kb on + strandat 3411.450 kb on + strandat 3411.452 kb on + strandat 3411.455 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-nitrobenzenesulfonyl fluoride
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3,408,772 - dusB b3260 0.49 -1.3
3,408,773 + dusB b3260 0.49 -0.8
3,408,842 + dusB b3260 0.56 +1.2
3,408,842 + dusB b3260 0.56 -1.3
3,408,847 + dusB b3260 0.56 +0.0
3,408,847 + dusB b3260 0.56 -0.8
3,408,909 - dusB b3260 0.63 +1.2
3,408,912 - dusB b3260 0.63 -0.8
3,408,942 + dusB b3260 0.66 +0.7
3,408,943 - dusB b3260 0.66 +0.2
3,408,943 - dusB b3260 0.66 -0.8
3,408,945 + dusB b3260 0.67 -2.6
3,408,945 + dusB b3260 0.67 -0.8
3,408,952 + dusB b3260 0.67 +0.3
3,408,953 - dusB b3260 0.67 -1.3
3,408,961 + dusB b3260 0.68 +0.7
3,408,988 - dusB b3260 0.71 +0.2
3,408,991 + dusB b3260 0.71 +0.8
3,409,134 - dusB b3260 0.86 -1.3
3,409,431 + fis b3261 0.46 +1.8
3,409,435 - fis b3261 0.48 +0.2
3,409,442 + fis b3261 0.50 +0.2
3,409,446 - fis b3261 0.52 +0.2
3,409,447 + fis b3261 0.52 +0.2
3,409,450 - fis b3261 0.53 -0.8
3,409,464 + fis b3261 0.58 -0.8
3,409,478 + fis b3261 0.62 -1.3
3,409,493 + fis b3261 0.67 +0.2
3,409,493 + fis b3261 0.67 -0.8
3,409,514 + fis b3261 0.74 +0.2
3,409,524 + fis b3261 0.78 -0.8
3,409,524 + fis b3261 0.78 +0.2
3,409,733 + -0.3
3,409,828 - yhdJ b3262 0.17 +0.1
3,409,873 - yhdJ b3262 0.22 +0.6
3,409,879 + yhdJ b3262 0.23 -0.3
3,409,879 + yhdJ b3262 0.23 +0.5
3,409,895 - yhdJ b3262 0.25 +1.7
3,409,915 + yhdJ b3262 0.27 +0.5
3,409,968 + yhdJ b3262 0.33 +1.8
3,410,048 - yhdJ b3262 0.42 +0.6
3,410,097 + yhdJ b3262 0.48 +0.0
3,410,108 + yhdJ b3262 0.49 -0.0
3,410,168 + yhdJ b3262 0.56 -0.1
3,410,186 - yhdJ b3262 0.58 +1.2
3,410,186 - yhdJ b3262 0.58 +1.7
3,410,316 + yhdJ b3262 0.72 +0.2
3,410,334 - yhdJ b3262 0.74 +0.2
3,410,423 + yhdJ b3262 0.85 +1.2
3,410,460 + yhdJ b3262 0.89 +2.1
3,410,464 + yhdJ b3262 0.89 +1.2
3,410,565 + -0.3
3,410,565 + +1.8
3,410,565 + +0.8
3,410,603 + +0.8
3,410,613 + -1.6
3,410,616 - +1.1
3,410,618 + +0.4
3,410,629 + +0.7
3,410,631 - +0.2
3,410,631 - -0.6
3,410,633 + +0.0
3,410,633 + -0.1
3,410,633 + +0.2
3,410,636 - +1.8
3,410,653 + -1.1
3,410,653 + +0.8
3,410,654 + -0.5
3,410,661 - yhdU b3263 0.10 +0.2
3,410,677 - yhdU b3263 0.19 +0.8
3,410,678 - yhdU b3263 0.19 +0.2
3,410,678 - yhdU b3263 0.19 -0.8
3,410,679 + yhdU b3263 0.20 +0.5
3,410,693 + yhdU b3263 0.28 +0.3
3,410,698 + yhdU b3263 0.31 -0.2
3,410,712 - yhdU b3263 0.38 +0.2
3,410,716 + yhdU b3263 0.41 +0.6
3,410,716 + yhdU b3263 0.41 +1.0
3,410,764 + yhdU b3263 0.67 +1.7
3,410,764 + yhdU b3263 0.67 +0.2
3,410,764 + yhdU b3263 0.67 +2.2
3,410,772 - yhdU b3263 0.72 +0.2
3,410,772 - yhdU b3263 0.72 +0.2
3,410,778 + yhdU b3263 0.75 +0.2
3,410,788 + yhdU b3263 0.81 +2.6
3,410,788 + yhdU b3263 0.81 -0.0
3,410,788 + yhdU b3263 0.81 +0.6
3,410,788 + yhdU b3263 0.81 +0.5
3,410,880 + +0.2
3,410,896 + envR b3264 0.11 -0.8
3,410,901 + envR b3264 0.11 +0.2
3,410,911 + envR b3264 0.13 -0.8
3,410,968 - envR b3264 0.22 +0.2
3,411,043 + envR b3264 0.33 +0.2
3,411,062 + envR b3264 0.36 +0.2
3,411,079 + envR b3264 0.38 +0.2
3,411,114 + envR b3264 0.44 +0.2
3,411,122 - envR b3264 0.45 +0.2
3,411,231 - envR b3264 0.61 +0.7
3,411,243 - envR b3264 0.63 +0.6
3,411,249 - envR b3264 0.64 -0.3
3,411,250 - envR b3264 0.64 -0.8
3,411,250 - envR b3264 0.64 +0.2
3,411,252 + envR b3264 0.64 +0.2
3,411,260 - envR b3264 0.66 +0.2
3,411,260 - envR b3264 0.66 +2.3
3,411,293 + envR b3264 0.71 +0.2
3,411,298 - envR b3264 0.71 +2.2
3,411,298 - envR b3264 0.71 +0.2
3,411,306 - envR b3264 0.73 +0.2
3,411,369 - envR b3264 0.82 -1.3
3,411,397 + envR b3264 0.86 -1.8
3,411,404 + envR b3264 0.87 +0.2
3,411,410 + envR b3264 0.88 +0.2
3,411,442 + +1.2
3,411,442 + +0.2
3,411,450 + +0.2
3,411,452 + +0.8
3,411,455 + +0.2

Or see this region's nucleotide sequence