Strain Fitness in Escherichia coli BW25113 around b2502

Experiment: 2-nitrobenzenesulfonyl fluoride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntppk and ppx are separated by 4 nucleotidesppx and yfgF are separated by 38 nucleotides b2501: ppk - polyphosphate kinase (NCBI), at 2,621,066 to 2,623,132 ppk b2502: ppx - exopolyphosphatase (NCBI), at 2,623,137 to 2,624,678 ppx b2503: yfgF - predicted inner membrane protein (NCBI), at 2,624,717 to 2,626,960 yfgF Position (kb) 2623 2624 2625Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2622.137 kb on - strand, within ppkat 2622.151 kb on - strand, within ppkat 2622.151 kb on - strand, within ppkat 2622.248 kb on - strand, within ppkat 2622.268 kb on - strand, within ppkat 2622.324 kb on + strand, within ppkat 2622.329 kb on + strand, within ppkat 2622.345 kb on + strand, within ppkat 2622.388 kb on - strand, within ppkat 2622.461 kb on + strand, within ppkat 2622.461 kb on + strand, within ppkat 2622.471 kb on - strand, within ppkat 2622.550 kb on - strand, within ppkat 2622.628 kb on - strand, within ppkat 2622.647 kb on + strand, within ppkat 2622.647 kb on + strand, within ppkat 2622.667 kb on - strand, within ppkat 2622.667 kb on - strand, within ppkat 2622.702 kb on - strand, within ppkat 2622.702 kb on - strand, within ppkat 2622.720 kb on - strand, within ppkat 2622.729 kb on - strand, within ppkat 2622.782 kb on - strand, within ppkat 2622.839 kb on - strand, within ppkat 2622.897 kb on - strand, within ppkat 2622.923 kb on - strand, within ppkat 2623.010 kb on + strandat 2623.037 kb on - strandat 2623.112 kb on - strandat 2623.112 kb on - strandat 2623.135 kb on - strandat 2623.171 kb on + strandat 2623.220 kb on - strandat 2623.220 kb on - strandat 2623.304 kb on - strand, within ppxat 2623.395 kb on - strand, within ppxat 2623.398 kb on - strand, within ppxat 2623.429 kb on + strand, within ppxat 2623.532 kb on - strand, within ppxat 2623.677 kb on + strand, within ppxat 2623.677 kb on + strand, within ppxat 2623.720 kb on + strand, within ppxat 2623.720 kb on + strand, within ppxat 2623.755 kb on + strand, within ppxat 2623.755 kb on + strand, within ppxat 2623.756 kb on - strand, within ppxat 2623.769 kb on - strand, within ppxat 2623.769 kb on - strand, within ppxat 2623.941 kb on + strand, within ppxat 2623.941 kb on + strand, within ppxat 2623.942 kb on - strand, within ppxat 2623.996 kb on + strand, within ppxat 2624.019 kb on - strand, within ppxat 2624.040 kb on - strandat 2624.040 kb on - strand, within ppxat 2624.119 kb on - strand, within ppxat 2624.127 kb on + strand, within ppxat 2624.147 kb on + strand, within ppxat 2624.147 kb on + strand, within ppxat 2624.155 kb on - strand, within ppxat 2624.248 kb on + strand, within ppxat 2624.431 kb on + strand, within ppxat 2624.441 kb on + strand, within ppxat 2624.491 kb on + strand, within ppxat 2624.539 kb on - strandat 2624.539 kb on - strandat 2624.578 kb on - strandat 2624.579 kb on + strandat 2624.579 kb on + strandat 2624.601 kb on + strandat 2624.601 kb on + strandat 2624.797 kb on - strandat 2624.821 kb on - strandat 2624.821 kb on - strandat 2624.860 kb on - strandat 2625.005 kb on - strand, within yfgFat 2625.087 kb on - strand, within yfgFat 2625.092 kb on - strand, within yfgFat 2625.197 kb on + strand, within yfgFat 2625.206 kb on - strand, within yfgFat 2625.235 kb on + strand, within yfgFat 2625.412 kb on - strand, within yfgFat 2625.412 kb on - strand, within yfgFat 2625.545 kb on + strand, within yfgFat 2625.603 kb on - strand, within yfgF

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-nitrobenzenesulfonyl fluoride
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2,622,137 - ppk b2501 0.52 -1.7
2,622,151 - ppk b2501 0.52 -0.7
2,622,151 - ppk b2501 0.52 -0.7
2,622,248 - ppk b2501 0.57 -3.4
2,622,268 - ppk b2501 0.58 -3.0
2,622,324 + ppk b2501 0.61 -1.5
2,622,329 + ppk b2501 0.61 -2.7
2,622,345 + ppk b2501 0.62 -2.9
2,622,388 - ppk b2501 0.64 -1.1
2,622,461 + ppk b2501 0.67 -0.7
2,622,461 + ppk b2501 0.67 -0.1
2,622,471 - ppk b2501 0.68 -2.7
2,622,550 - ppk b2501 0.72 -2.1
2,622,628 - ppk b2501 0.76 -2.1
2,622,647 + ppk b2501 0.76 -0.1
2,622,647 + ppk b2501 0.76 -1.7
2,622,667 - ppk b2501 0.77 -2.7
2,622,667 - ppk b2501 0.77 -1.7
2,622,702 - ppk b2501 0.79 -2.1
2,622,702 - ppk b2501 0.79 -2.1
2,622,720 - ppk b2501 0.80 -1.1
2,622,729 - ppk b2501 0.80 -1.1
2,622,782 - ppk b2501 0.83 -2.7
2,622,839 - ppk b2501 0.86 -0.1
2,622,897 - ppk b2501 0.89 +0.9
2,622,923 - ppk b2501 0.90 -1.3
2,623,010 + -3.4
2,623,037 - -1.1
2,623,112 - -0.4
2,623,112 - -1.7
2,623,135 - -0.0
2,623,171 + +1.5
2,623,220 - -0.3
2,623,220 - -0.1
2,623,304 - ppx b2502 0.11 +0.2
2,623,395 - ppx b2502 0.17 +0.9
2,623,398 - ppx b2502 0.17 +0.3
2,623,429 + ppx b2502 0.19 +1.3
2,623,532 - ppx b2502 0.26 -0.5
2,623,677 + ppx b2502 0.35 -0.1
2,623,677 + ppx b2502 0.35 +0.5
2,623,720 + ppx b2502 0.38 -0.7
2,623,720 + ppx b2502 0.38 +2.5
2,623,755 + ppx b2502 0.40 +1.2
2,623,755 + ppx b2502 0.40 +1.9
2,623,756 - ppx b2502 0.40 -0.1
2,623,769 - ppx b2502 0.41 +3.8
2,623,769 - ppx b2502 0.41 +1.9
2,623,941 + ppx b2502 0.52 +0.2
2,623,941 + ppx b2502 0.52 +1.8
2,623,942 - ppx b2502 0.52 +0.5
2,623,996 + ppx b2502 0.56 +1.1
2,624,019 - ppx b2502 0.57 +1.6
2,624,040 - +0.9
2,624,040 - ppx b2502 0.59 +0.5
2,624,119 - ppx b2502 0.64 +0.9
2,624,127 + ppx b2502 0.64 +0.2
2,624,147 + ppx b2502 0.65 -1.1
2,624,147 + ppx b2502 0.65 -0.1
2,624,155 - ppx b2502 0.66 +1.8
2,624,248 + ppx b2502 0.72 +0.5
2,624,431 + ppx b2502 0.84 +1.9
2,624,441 + ppx b2502 0.85 +1.7
2,624,491 + ppx b2502 0.88 +1.5
2,624,539 - -0.1
2,624,539 - +0.7
2,624,578 - +1.5
2,624,579 + +1.1
2,624,579 + +1.3
2,624,601 + -0.7
2,624,601 + +2.7
2,624,797 - +0.9
2,624,821 - -2.4
2,624,821 - +2.5
2,624,860 - -0.9
2,625,005 - yfgF b2503 0.13 +0.2
2,625,087 - yfgF b2503 0.16 +0.4
2,625,092 - yfgF b2503 0.17 +0.3
2,625,197 + yfgF b2503 0.21 +0.1
2,625,206 - yfgF b2503 0.22 -1.3
2,625,235 + yfgF b2503 0.23 +2.5
2,625,412 - yfgF b2503 0.31 -1.0
2,625,412 - yfgF b2503 0.31 +1.0
2,625,545 + yfgF b2503 0.37 +1.4
2,625,603 - yfgF b2503 0.39 +0.3

Or see this region's nucleotide sequence