Experiment: Vogels_fungal_media 0.1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03435 and PS417_03445 are separated by 566 nucleotides PS417_03445 and PS417_03450 are separated by 191 nucleotides PS417_03450 and PS417_03455 are separated by 263 nucleotides
PS417_03435: PS417_03435 - cytochrome P450, at 790,323 to 792,323
_03435
PS417_03445: PS417_03445 - tRNA-Met, at 792,890 to 792,966
_03445
PS417_03450: PS417_03450 - RNA polymerase sigma factor, at 793,158 to 793,709
_03450
PS417_03455: PS417_03455 - type III secretion protein, at 793,973 to 795,037
_03455
Position (kb)
793
794 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 792.207 kb on + strand at 792.466 kb on - strand at 792.466 kb on - strand at 792.466 kb on - strand at 792.633 kb on + strand at 792.634 kb on - strand at 792.634 kb on - strand at 793.235 kb on + strand, within PS417_03450 at 793.294 kb on + strand, within PS417_03450 at 793.488 kb on - strand, within PS417_03450 at 793.555 kb on + strand, within PS417_03450 at 793.727 kb on - strand at 793.762 kb on + strand at 793.856 kb on + strand at 793.856 kb on + strand at 793.856 kb on + strand at 794.321 kb on + strand, within PS417_03455 at 794.321 kb on + strand, within PS417_03455 at 794.322 kb on - strand, within PS417_03455
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.1X remove 792,207 + -1.8 792,466 - -2.7 792,466 - -1.1 792,466 - +1.2 792,633 + +1.1 792,634 - -2.0 792,634 - -1.1 793,235 + PS417_03450 0.14 +0.5 793,294 + PS417_03450 0.25 +0.6 793,488 - PS417_03450 0.60 +3.0 793,555 + PS417_03450 0.72 +1.7 793,727 - -2.0 793,762 + -1.5 793,856 + -1.4 793,856 + -0.3 793,856 + -1.2 794,321 + PS417_03455 0.33 -0.5 794,321 + PS417_03455 0.33 -1.1 794,322 - PS417_03455 0.33 -1.1
Or see this region's nucleotide sequence