Experiment: Vogels_fungal_media 0.1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26560 and PS417_26565 are separated by 108 nucleotides PS417_26565 and PS417_26570 are separated by 42 nucleotides PS417_26570 and PS417_26575 are separated by 145 nucleotides
PS417_26560: PS417_26560 - amino acid dehydrogenase, at 5,743,631 to 5,744,854
_26560
PS417_26565: PS417_26565 - LysR family transcriptional regulator, at 5,744,963 to 5,745,865
_26565
PS417_26570: PS417_26570 - hemolysin III, at 5,745,908 to 5,746,525
_26570
PS417_26575: PS417_26575 - LysR family transcriptional regulator, at 5,746,671 to 5,747,591
_26575
Position (kb) 5744
5745
5746 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5744.042 kb on + strand, within PS417_26560 at 5744.043 kb on - strand, within PS417_26560 at 5744.173 kb on + strand, within PS417_26560 at 5744.215 kb on + strand, within PS417_26560 at 5744.215 kb on + strand, within PS417_26560 at 5744.215 kb on + strand, within PS417_26560 at 5744.301 kb on + strand, within PS417_26560 at 5744.301 kb on + strand, within PS417_26560 at 5744.301 kb on + strand, within PS417_26560 at 5744.301 kb on + strand, within PS417_26560 at 5744.938 kb on + strand at 5744.939 kb on - strand at 5744.945 kb on + strand at 5745.480 kb on - strand, within PS417_26565 at 5745.587 kb on + strand, within PS417_26565 at 5745.587 kb on + strand, within PS417_26565 at 5745.587 kb on + strand, within PS417_26565 at 5745.767 kb on + strand, within PS417_26565 at 5745.802 kb on + strand at 5745.850 kb on - strand at 5745.864 kb on - strand at 5745.918 kb on + strand at 5745.918 kb on + strand at 5745.918 kb on + strand at 5745.919 kb on - strand at 5745.919 kb on - strand at 5745.919 kb on - strand at 5745.919 kb on - strand at 5745.976 kb on + strand, within PS417_26570 at 5746.018 kb on + strand, within PS417_26570 at 5746.032 kb on + strand, within PS417_26570 at 5746.032 kb on + strand, within PS417_26570 at 5746.032 kb on + strand, within PS417_26570 at 5746.032 kb on + strand, within PS417_26570 at 5746.033 kb on - strand, within PS417_26570 at 5746.061 kb on - strand, within PS417_26570 at 5746.270 kb on - strand, within PS417_26570 at 5746.291 kb on - strand, within PS417_26570 at 5746.291 kb on - strand, within PS417_26570 at 5746.351 kb on - strand, within PS417_26570 at 5746.368 kb on + strand, within PS417_26570 at 5746.384 kb on + strand, within PS417_26570 at 5746.385 kb on - strand, within PS417_26570 at 5746.385 kb on - strand, within PS417_26570 at 5746.393 kb on - strand, within PS417_26570 at 5746.393 kb on - strand, within PS417_26570 at 5746.393 kb on - strand, within PS417_26570 at 5746.521 kb on + strand at 5746.521 kb on + strand at 5746.521 kb on + strand at 5746.522 kb on - strand at 5746.602 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.1X remove 5,744,042 + PS417_26560 0.34 +0.6 5,744,043 - PS417_26560 0.34 -0.1 5,744,173 + PS417_26560 0.44 +0.9 5,744,215 + PS417_26560 0.48 +0.1 5,744,215 + PS417_26560 0.48 +0.4 5,744,215 + PS417_26560 0.48 -0.1 5,744,301 + PS417_26560 0.55 +0.6 5,744,301 + PS417_26560 0.55 -0.0 5,744,301 + PS417_26560 0.55 +0.4 5,744,301 + PS417_26560 0.55 -0.5 5,744,938 + +0.7 5,744,939 - -2.9 5,744,945 + -0.5 5,745,480 - PS417_26565 0.57 +2.3 5,745,587 + PS417_26565 0.69 +0.7 5,745,587 + PS417_26565 0.69 -0.2 5,745,587 + PS417_26565 0.69 +0.8 5,745,767 + PS417_26565 0.89 -0.5 5,745,802 + -0.2 5,745,850 - -1.0 5,745,864 - +0.1 5,745,918 + +0.8 5,745,918 + +0.1 5,745,918 + +0.6 5,745,919 - +0.1 5,745,919 - -0.8 5,745,919 - -1.6 5,745,919 - +0.7 5,745,976 + PS417_26570 0.11 +0.4 5,746,018 + PS417_26570 0.18 +0.1 5,746,032 + PS417_26570 0.20 +0.3 5,746,032 + PS417_26570 0.20 +1.1 5,746,032 + PS417_26570 0.20 -0.8 5,746,032 + PS417_26570 0.20 -0.7 5,746,033 - PS417_26570 0.20 +1.0 5,746,061 - PS417_26570 0.25 +0.1 5,746,270 - PS417_26570 0.59 -0.6 5,746,291 - PS417_26570 0.62 +0.4 5,746,291 - PS417_26570 0.62 -0.2 5,746,351 - PS417_26570 0.72 -0.7 5,746,368 + PS417_26570 0.74 -0.2 5,746,384 + PS417_26570 0.77 +0.6 5,746,385 - PS417_26570 0.77 -0.1 5,746,385 - PS417_26570 0.77 -0.5 5,746,393 - PS417_26570 0.78 -0.1 5,746,393 - PS417_26570 0.78 +1.4 5,746,393 - PS417_26570 0.78 +1.4 5,746,521 + +0.6 5,746,521 + +0.0 5,746,521 + +0.4 5,746,522 - +0.4 5,746,602 - -0.2
Or see this region's nucleotide sequence