Strain Fitness in Pseudomonas simiae WCS417 around PS417_22545

Experiment: Vogels_fungal_media 0.1X

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_22540 and PS417_22545 are separated by 305 nucleotidesPS417_22545 and PS417_22550 are separated by 4 nucleotides PS417_22540: PS417_22540 - preprotein translocase subunit SecA, at 4,878,970 to 4,881,705 _22540 PS417_22545: PS417_22545 - hypothetical protein, at 4,882,011 to 4,882,466 _22545 PS417_22550: PS417_22550 - ATP-binding protein, at 4,882,471 to 4,883,949 _22550 Position (kb) 4882 4883Strain fitness (log2 ratio) -3 -2 -1 0 1at 4881.728 kb on - strandat 4881.906 kb on - strandat 4881.911 kb on - strandat 4881.930 kb on - strandat 4881.993 kb on + strandat 4881.997 kb on + strandat 4881.998 kb on - strandat 4881.998 kb on - strandat 4882.956 kb on + strand, within PS417_22550at 4882.956 kb on + strand, within PS417_22550at 4882.959 kb on + strand, within PS417_22550at 4882.959 kb on + strand, within PS417_22550at 4883.045 kb on + strand, within PS417_22550at 4883.129 kb on - strand, within PS417_22550at 4883.234 kb on + strand, within PS417_22550

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.1X
remove
4,881,728 - -2.2
4,881,906 - -1.7
4,881,911 - -1.3
4,881,930 - +1.2
4,881,993 + +0.0
4,881,997 + -2.8
4,881,998 - +0.9
4,881,998 - +0.5
4,882,956 + PS417_22550 0.33 +0.5
4,882,956 + PS417_22550 0.33 -1.8
4,882,959 + PS417_22550 0.33 +0.5
4,882,959 + PS417_22550 0.33 -0.8
4,883,045 + PS417_22550 0.39 +1.5
4,883,129 - PS417_22550 0.44 -2.1
4,883,234 + PS417_22550 0.52 +0.2

Or see this region's nucleotide sequence