Strain Fitness in Pseudomonas simiae WCS417 around PS417_17845

Experiment: Vogels_fungal_media 0.1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_17840 and PS417_17845 are separated by 49 nucleotidesPS417_17845 and PS417_17850 are separated by 15 nucleotidesPS417_17850 and PS417_17855 are separated by 63 nucleotides PS417_17840: PS417_17840 - betaine-aldehyde dehydrogenase, at 3,895,311 to 3,896,771 _17840 PS417_17845: PS417_17845 - 3,4-dihydroxyphenylacetate 2,3-dioxygenase, at 3,896,821 to 3,897,678 _17845 PS417_17850: PS417_17850 - 5-carboxymethyl-2-hydroxymuconate isomerase, at 3,897,694 to 3,898,107 _17850 PS417_17855: PS417_17855 - major facilitator transporter, at 3,898,171 to 3,899,475 _17855 Position (kb) 3896 3897 3898Strain fitness (log2 ratio) -3 -2 -1 0 1at 3896.542 kb on - strand, within PS417_17840at 3896.792 kb on - strandat 3896.805 kb on - strandat 3896.858 kb on + strandat 3896.870 kb on - strandat 3897.046 kb on + strand, within PS417_17845at 3897.088 kb on + strand, within PS417_17845at 3897.217 kb on + strand, within PS417_17845at 3897.217 kb on + strand, within PS417_17845at 3897.218 kb on - strand, within PS417_17845at 3898.271 kb on - strandat 3898.271 kb on - strandat 3898.354 kb on + strand, within PS417_17855at 3898.519 kb on + strand, within PS417_17855at 3898.520 kb on - strand, within PS417_17855at 3898.520 kb on - strand, within PS417_17855

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.1X
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3,896,542 - PS417_17840 0.84 +0.1
3,896,792 - +1.3
3,896,805 - -1.1
3,896,858 + -0.1
3,896,870 - -0.1
3,897,046 + PS417_17845 0.26 +1.7
3,897,088 + PS417_17845 0.31 +0.7
3,897,217 + PS417_17845 0.46 +0.3
3,897,217 + PS417_17845 0.46 +0.5
3,897,218 - PS417_17845 0.46 +0.6
3,898,271 - -2.8
3,898,271 - -0.0
3,898,354 + PS417_17855 0.14 +0.7
3,898,519 + PS417_17855 0.27 +0.2
3,898,520 - PS417_17855 0.27 -1.7
3,898,520 - PS417_17855 0.27 -1.4

Or see this region's nucleotide sequence