Experiment: Vogels_fungal_media 0.1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00965 and PS417_00970 are separated by 82 nucleotides PS417_00970 and PS417_00975 are separated by 15 nucleotides PS417_00975 and PS417_00985 are separated by 136 nucleotides
PS417_00965: PS417_00965 - AraC family transcriptional regulator, at 214,157 to 215,161
_00965
PS417_00970: PS417_00970 - hypothetical protein, at 215,244 to 216,023
_00970
PS417_00975: PS417_00975 - hypothetical protein, at 216,039 to 216,356
_00975
PS417_00985: PS417_00985 - MFS transporter, at 216,493 to 217,662
_00985
Position (kb) 215
216
217 Strain fitness (log2 ratio) -2
-1
0
1 at 214.687 kb on - strand, within PS417_00965 at 214.722 kb on + strand, within PS417_00965 at 214.722 kb on + strand, within PS417_00965 at 214.722 kb on + strand, within PS417_00965 at 214.723 kb on - strand, within PS417_00965 at 214.723 kb on - strand, within PS417_00965 at 214.723 kb on - strand, within PS417_00965 at 215.239 kb on - strand at 215.448 kb on + strand, within PS417_00970 at 215.449 kb on - strand, within PS417_00970 at 215.547 kb on + strand, within PS417_00970 at 215.548 kb on - strand, within PS417_00970 at 215.574 kb on - strand, within PS417_00970 at 215.832 kb on + strand, within PS417_00970 at 215.832 kb on + strand, within PS417_00970 at 215.833 kb on - strand, within PS417_00970 at 215.833 kb on - strand, within PS417_00970 at 215.868 kb on + strand, within PS417_00970 at 215.869 kb on - strand, within PS417_00970 at 215.869 kb on - strand, within PS417_00970 at 216.045 kb on + strand at 216.046 kb on - strand at 216.186 kb on + strand, within PS417_00975 at 216.186 kb on + strand, within PS417_00975 at 216.491 kb on - strand at 216.494 kb on + strand at 216.494 kb on + strand at 216.495 kb on - strand at 216.495 kb on - strand at 216.496 kb on + strand at 216.980 kb on + strand, within PS417_00985 at 217.010 kb on + strand, within PS417_00985
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.1X remove 214,687 - PS417_00965 0.53 +0.9 214,722 + PS417_00965 0.56 +0.2 214,722 + PS417_00965 0.56 -0.1 214,722 + PS417_00965 0.56 -0.4 214,723 - PS417_00965 0.56 -1.2 214,723 - PS417_00965 0.56 -0.2 214,723 - PS417_00965 0.56 +0.5 215,239 - -0.2 215,448 + PS417_00970 0.26 +0.2 215,449 - PS417_00970 0.26 -0.4 215,547 + PS417_00970 0.39 -0.6 215,548 - PS417_00970 0.39 -0.9 215,574 - PS417_00970 0.42 -0.7 215,832 + PS417_00970 0.75 -0.8 215,832 + PS417_00970 0.75 -0.3 215,833 - PS417_00970 0.76 -1.8 215,833 - PS417_00970 0.76 -0.5 215,868 + PS417_00970 0.80 -0.4 215,869 - PS417_00970 0.80 -0.7 215,869 - PS417_00970 0.80 -0.1 216,045 + +1.1 216,046 - -0.7 216,186 + PS417_00975 0.46 +1.0 216,186 + PS417_00975 0.46 -1.2 216,491 - +0.1 216,494 + +0.6 216,494 + -0.4 216,495 - +0.3 216,495 - -0.1 216,496 + +1.1 216,980 + PS417_00985 0.42 +0.2 217,010 + PS417_00985 0.44 -0.1
Or see this region's nucleotide sequence