Strain Fitness in Pseudomonas simiae WCS417 around PS417_05120

Experiment: Vogels_fungal_media 0.1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_05110 and PS417_05115 are separated by 0 nucleotidesPS417_05115 and PS417_05120 are separated by 8 nucleotidesPS417_05120 and PS417_05125 overlap by 4 nucleotidesPS417_05125 and PS417_05130 are separated by 0 nucleotides PS417_05110: PS417_05110 - peptidase, at 1,134,909 to 1,136,483 _05110 PS417_05115: PS417_05115 - hypothetical protein, at 1,136,484 to 1,136,810 _05115 PS417_05120: PS417_05120 - RNA polymerase subunit sigma-24, at 1,136,819 to 1,137,397 _05120 PS417_05125: PS417_05125 - sugar ABC transporter substrate-binding protein, at 1,137,394 to 1,138,371 _05125 PS417_05130: PS417_05130 - glutaredoxin, at 1,138,372 to 1,138,722 _05130 Position (kb) 1136 1137 1138Strain fitness (log2 ratio) -1 0 1 2at 1135.890 kb on + strand, within PS417_05110at 1135.891 kb on - strand, within PS417_05110at 1135.938 kb on + strand, within PS417_05110at 1135.938 kb on + strand, within PS417_05110at 1135.939 kb on - strand, within PS417_05110at 1135.943 kb on + strand, within PS417_05110at 1136.508 kb on + strandat 1136.508 kb on + strandat 1136.561 kb on - strandat 1137.038 kb on + strand, within PS417_05120at 1137.039 kb on - strand, within PS417_05120at 1137.039 kb on - strand, within PS417_05120at 1137.320 kb on - strand, within PS417_05120at 1137.758 kb on - strand, within PS417_05125at 1137.868 kb on - strand, within PS417_05125at 1138.165 kb on + strand, within PS417_05125at 1138.166 kb on - strand, within PS417_05125at 1138.210 kb on + strand, within PS417_05125at 1138.211 kb on - strand, within PS417_05125

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.1X
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1,135,890 + PS417_05110 0.62 -1.1
1,135,891 - PS417_05110 0.62 +0.2
1,135,938 + PS417_05110 0.65 -0.5
1,135,938 + PS417_05110 0.65 -0.7
1,135,939 - PS417_05110 0.65 -0.8
1,135,943 + PS417_05110 0.66 -0.8
1,136,508 + -0.1
1,136,508 + +1.8
1,136,561 - +0.5
1,137,038 + PS417_05120 0.38 +0.3
1,137,039 - PS417_05120 0.38 +1.2
1,137,039 - PS417_05120 0.38 -0.6
1,137,320 - PS417_05120 0.87 +1.6
1,137,758 - PS417_05125 0.37 -0.6
1,137,868 - PS417_05125 0.48 +1.0
1,138,165 + PS417_05125 0.79 +0.3
1,138,166 - PS417_05125 0.79 +1.1
1,138,210 + PS417_05125 0.83 +0.4
1,138,211 - PS417_05125 0.84 +0.4

Or see this region's nucleotide sequence