Strain Fitness in Pseudomonas simiae WCS417 around PS417_20980

Experiment: Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_20975 and PS417_20980 are separated by 26 nucleotidesPS417_20980 and PS417_20985 are separated by 60 nucleotides PS417_20975: PS417_20975 - protein kinase, at 4,562,939 to 4,564,609 _20975 PS417_20980: PS417_20980 - uroporphyrin-III methyltransferase, at 4,564,636 to 4,565,379 _20980 PS417_20985: PS417_20985 - porin, at 4,565,440 to 4,566,420 _20985 Position (kb) 4564 4565 4566Strain fitness (log2 ratio) -2 -1 0 1at 4563.736 kb on - strand, within PS417_20975at 4563.765 kb on - strand, within PS417_20975at 4563.852 kb on + strand, within PS417_20975at 4563.935 kb on + strand, within PS417_20975at 4563.935 kb on + strand, within PS417_20975at 4563.935 kb on + strand, within PS417_20975at 4563.935 kb on + strand, within PS417_20975at 4563.936 kb on - strand, within PS417_20975at 4563.938 kb on + strand, within PS417_20975at 4563.938 kb on + strand, within PS417_20975at 4563.938 kb on + strand, within PS417_20975at 4563.938 kb on + strandat 4564.151 kb on + strand, within PS417_20975at 4564.202 kb on - strand, within PS417_20975at 4564.208 kb on - strandat 4564.208 kb on - strand, within PS417_20975at 4564.257 kb on + strand, within PS417_20975at 4564.257 kb on + strand, within PS417_20975at 4564.258 kb on - strand, within PS417_20975at 4564.258 kb on - strand, within PS417_20975at 4564.258 kb on - strand, within PS417_20975at 4564.258 kb on - strand, within PS417_20975at 4564.258 kb on - strand, within PS417_20975at 4564.258 kb on - strand, within PS417_20975at 4564.258 kb on - strand, within PS417_20975at 4564.258 kb on - strand, within PS417_20975at 4564.258 kb on - strand, within PS417_20975at 4564.259 kb on + strand, within PS417_20975at 4564.259 kb on + strand, within PS417_20975at 4564.260 kb on - strand, within PS417_20975at 4564.260 kb on - strand, within PS417_20975at 4564.260 kb on - strand, within PS417_20975at 4564.280 kb on + strand, within PS417_20975at 4564.280 kb on + strand, within PS417_20975at 4564.281 kb on - strand, within PS417_20975at 4564.281 kb on - strand, within PS417_20975at 4564.281 kb on - strand, within PS417_20975at 4564.281 kb on - strand, within PS417_20975at 4564.281 kb on - strand, within PS417_20975at 4564.283 kb on + strand, within PS417_20975at 4564.283 kb on + strand, within PS417_20975at 4564.284 kb on - strand, within PS417_20975at 4564.589 kb on + strandat 4564.635 kb on + strandat 4564.636 kb on - strandat 4564.859 kb on - strand, within PS417_20980at 4564.860 kb on + strand, within PS417_20980at 4564.860 kb on + strand, within PS417_20980at 4565.134 kb on + strand, within PS417_20980at 4565.134 kb on + strand, within PS417_20980at 4565.134 kb on + strand, within PS417_20980at 4565.135 kb on - strand, within PS417_20980at 4565.135 kb on - strand, within PS417_20980at 4565.199 kb on + strand, within PS417_20980at 4565.268 kb on + strand, within PS417_20980at 4565.535 kb on - strandat 4565.627 kb on + strand, within PS417_20985at 4565.677 kb on - strand, within PS417_20985at 4565.979 kb on - strand, within PS417_20985at 4566.012 kb on + strand, within PS417_20985

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB
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4,563,736 - PS417_20975 0.48 +1.7
4,563,765 - PS417_20975 0.49 -1.1
4,563,852 + PS417_20975 0.55 -0.7
4,563,935 + PS417_20975 0.60 -0.3
4,563,935 + PS417_20975 0.60 -0.1
4,563,935 + PS417_20975 0.60 -0.1
4,563,935 + PS417_20975 0.60 -0.2
4,563,936 - PS417_20975 0.60 +0.6
4,563,938 + PS417_20975 0.60 -0.5
4,563,938 + PS417_20975 0.60 +0.1
4,563,938 + PS417_20975 0.60 -0.3
4,563,938 + -0.2
4,564,151 + PS417_20975 0.73 -0.4
4,564,202 - PS417_20975 0.76 -0.8
4,564,208 - -0.9
4,564,208 - PS417_20975 0.76 -0.5
4,564,257 + PS417_20975 0.79 -0.4
4,564,257 + PS417_20975 0.79 -0.6
4,564,258 - PS417_20975 0.79 -0.2
4,564,258 - PS417_20975 0.79 -0.4
4,564,258 - PS417_20975 0.79 +0.1
4,564,258 - PS417_20975 0.79 -0.4
4,564,258 - PS417_20975 0.79 +0.4
4,564,258 - PS417_20975 0.79 -0.5
4,564,258 - PS417_20975 0.79 -0.7
4,564,258 - PS417_20975 0.79 +0.3
4,564,258 - PS417_20975 0.79 -1.8
4,564,259 + PS417_20975 0.79 +0.0
4,564,259 + PS417_20975 0.79 -1.9
4,564,260 - PS417_20975 0.79 -1.8
4,564,260 - PS417_20975 0.79 -2.3
4,564,260 - PS417_20975 0.79 -1.1
4,564,280 + PS417_20975 0.80 +1.4
4,564,280 + PS417_20975 0.80 +0.1
4,564,281 - PS417_20975 0.80 -0.5
4,564,281 - PS417_20975 0.80 -1.0
4,564,281 - PS417_20975 0.80 +0.5
4,564,281 - PS417_20975 0.80 -1.6
4,564,281 - PS417_20975 0.80 +1.0
4,564,283 + PS417_20975 0.80 +0.2
4,564,283 + PS417_20975 0.80 -0.4
4,564,284 - PS417_20975 0.80 +0.3
4,564,589 + -1.1
4,564,635 + +0.0
4,564,636 - +1.5
4,564,859 - PS417_20980 0.30 -0.6
4,564,860 + PS417_20980 0.30 -0.5
4,564,860 + PS417_20980 0.30 -0.7
4,565,134 + PS417_20980 0.67 +0.3
4,565,134 + PS417_20980 0.67 +0.1
4,565,134 + PS417_20980 0.67 -1.5
4,565,135 - PS417_20980 0.67 -2.4
4,565,135 - PS417_20980 0.67 -0.4
4,565,199 + PS417_20980 0.76 -0.9
4,565,268 + PS417_20980 0.85 -1.5
4,565,535 - +0.1
4,565,627 + PS417_20985 0.19 -1.8
4,565,677 - PS417_20985 0.24 -1.3
4,565,979 - PS417_20985 0.55 +0.5
4,566,012 + PS417_20985 0.58 -1.6

Or see this region's nucleotide sequence