Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03855 and PS417_03865 are separated by 288 nucleotides PS417_03865 and PS417_03870 are separated by 103 nucleotides PS417_03870 and PS417_03875 overlap by 4 nucleotides
PS417_03855: PS417_03855 - NADH dehydrogenase, at 866,869 to 868,167
_03855
PS417_03865: PS417_03865 - hypothetical protein, at 868,456 to 869,085
_03865
PS417_03870: PS417_03870 - hypothetical protein, at 869,189 to 869,656
_03870
PS417_03875: PS417_03875 - membrane protein, at 869,653 to 870,342
_03875
Position (kb) 868
869
870 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 867.512 kb on - strand, within PS417_03855 at 867.512 kb on - strand, within PS417_03855 at 867.512 kb on - strand, within PS417_03855 at 867.512 kb on - strand, within PS417_03855 at 867.975 kb on - strand, within PS417_03855 at 868.041 kb on + strand at 868.152 kb on + strand at 868.152 kb on + strand at 868.153 kb on - strand at 868.153 kb on - strand at 868.155 kb on + strand at 868.155 kb on + strand at 868.156 kb on - strand at 868.156 kb on - strand at 868.174 kb on - strand at 868.205 kb on + strand at 868.355 kb on + strand at 868.401 kb on + strand at 868.417 kb on + strand at 868.483 kb on + strand at 868.483 kb on + strand at 868.484 kb on - strand at 868.484 kb on - strand at 868.595 kb on + strand, within PS417_03865 at 868.700 kb on + strand, within PS417_03865 at 868.700 kb on + strand, within PS417_03865 at 868.701 kb on - strand, within PS417_03865 at 868.701 kb on - strand, within PS417_03865 at 868.704 kb on + strand, within PS417_03865 at 868.704 kb on + strand, within PS417_03865 at 869.069 kb on + strand at 869.085 kb on + strand at 869.085 kb on + strand at 869.085 kb on + strand at 869.085 kb on + strand at 869.145 kb on + strand at 869.200 kb on - strand at 869.300 kb on + strand, within PS417_03870 at 869.300 kb on + strand, within PS417_03870 at 869.489 kb on + strand, within PS417_03870 at 869.554 kb on + strand, within PS417_03870 at 869.606 kb on + strand, within PS417_03870 at 869.606 kb on + strand, within PS417_03870 at 869.606 kb on + strand, within PS417_03870 at 869.707 kb on + strand at 869.707 kb on + strand at 869.707 kb on + strand at 869.707 kb on + strand at 869.707 kb on + strand at 869.720 kb on + strand at 870.070 kb on + strand, within PS417_03875 at 870.071 kb on - strand, within PS417_03875 at 870.072 kb on + strand, within PS417_03875
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB remove 867,512 - PS417_03855 0.49 -0.0 867,512 - PS417_03855 0.49 +0.8 867,512 - PS417_03855 0.49 -0.4 867,512 - PS417_03855 0.49 -0.5 867,975 - PS417_03855 0.85 -1.3 868,041 + -2.0 868,152 + -3.1 868,152 + -1.0 868,153 - -0.0 868,153 - -0.8 868,155 + -0.2 868,155 + -1.0 868,156 - -0.7 868,156 - -0.9 868,174 - +0.0 868,205 + -0.8 868,355 + +0.1 868,401 + -0.1 868,417 + +0.9 868,483 + -0.2 868,483 + -1.3 868,484 - -1.3 868,484 - -0.1 868,595 + PS417_03865 0.22 -1.2 868,700 + PS417_03865 0.39 -0.2 868,700 + PS417_03865 0.39 -1.8 868,701 - PS417_03865 0.39 +1.1 868,701 - PS417_03865 0.39 -2.5 868,704 + PS417_03865 0.39 -1.3 868,704 + PS417_03865 0.39 -0.4 869,069 + +0.5 869,085 + -0.9 869,085 + -0.5 869,085 + +1.1 869,085 + -0.4 869,145 + +0.7 869,200 - +0.2 869,300 + PS417_03870 0.24 -0.7 869,300 + PS417_03870 0.24 -1.0 869,489 + PS417_03870 0.64 +0.2 869,554 + PS417_03870 0.78 -2.2 869,606 + PS417_03870 0.89 +0.2 869,606 + PS417_03870 0.89 -0.3 869,606 + PS417_03870 0.89 +0.8 869,707 + -0.4 869,707 + -1.5 869,707 + -1.4 869,707 + +1.7 869,707 + -1.1 869,720 + -0.2 870,070 + PS417_03875 0.60 +1.5 870,071 - PS417_03875 0.61 +0.4 870,072 + PS417_03875 0.61 -1.1
Or see this region's nucleotide sequence