Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03505 and PS417_03510 are separated by 0 nucleotides PS417_03510 and PS417_03515 are separated by 11 nucleotides PS417_03515 and PS417_03520 overlap by 4 nucleotides
PS417_03505: PS417_03505 - type III secretion system protein, at 803,013 to 804,110
_03505
PS417_03510: PS417_03510 - type III secretion system negative regulatory protein RspV, at 804,111 to 804,449
_03510
PS417_03515: PS417_03515 - type III secretion protein, at 804,461 to 804,664
_03515
PS417_03520: PS417_03520 - secretin, at 804,661 to 806,802
_03520
Position (kb) 804
805 Strain fitness (log2 ratio) -1
0
1
2 at 803.481 kb on + strand, within PS417_03505 at 803.481 kb on + strand, within PS417_03505 at 803.482 kb on - strand, within PS417_03505 at 803.482 kb on - strand, within PS417_03505 at 803.482 kb on - strand, within PS417_03505 at 803.488 kb on + strand, within PS417_03505 at 803.544 kb on + strand, within PS417_03505 at 803.544 kb on + strand, within PS417_03505 at 803.544 kb on + strand, within PS417_03505 at 803.545 kb on - strand, within PS417_03505 at 803.545 kb on - strand, within PS417_03505 at 803.545 kb on - strand, within PS417_03505 at 803.745 kb on + strand, within PS417_03505 at 803.842 kb on - strand, within PS417_03505 at 803.855 kb on + strand, within PS417_03505 at 803.956 kb on + strand, within PS417_03505 at 803.956 kb on + strand, within PS417_03505 at 803.956 kb on + strand, within PS417_03505 at 803.957 kb on - strand, within PS417_03505 at 803.957 kb on - strand, within PS417_03505 at 803.957 kb on - strand, within PS417_03505 at 803.957 kb on - strand, within PS417_03505 at 804.229 kb on + strand, within PS417_03510 at 804.230 kb on - strand, within PS417_03510 at 804.230 kb on - strand, within PS417_03510 at 804.233 kb on + strand, within PS417_03510 at 804.233 kb on + strand, within PS417_03510 at 804.605 kb on - strand, within PS417_03515 at 804.752 kb on - strand at 804.752 kb on - strand at 804.890 kb on + strand, within PS417_03520 at 805.137 kb on - strand, within PS417_03520 at 805.416 kb on + strand, within PS417_03520 at 805.416 kb on + strand, within PS417_03520 at 805.426 kb on + strand, within PS417_03520 at 805.501 kb on + strand, within PS417_03520 at 805.527 kb on - strand, within PS417_03520 at 805.547 kb on + strand, within PS417_03520 at 805.547 kb on + strand, within PS417_03520 at 805.547 kb on + strand, within PS417_03520 at 805.547 kb on + strand, within PS417_03520 at 805.547 kb on + strand, within PS417_03520 at 805.548 kb on - strand, within PS417_03520 at 805.548 kb on - strand, within PS417_03520 at 805.548 kb on - strand, within PS417_03520 at 805.548 kb on - strand, within PS417_03520 at 805.548 kb on - strand, within PS417_03520 at 805.548 kb on - strand, within PS417_03520
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB remove 803,481 + PS417_03505 0.43 -0.5 803,481 + PS417_03505 0.43 +0.7 803,482 - PS417_03505 0.43 +0.4 803,482 - PS417_03505 0.43 -0.1 803,482 - PS417_03505 0.43 +0.2 803,488 + PS417_03505 0.43 -1.3 803,544 + PS417_03505 0.48 +1.1 803,544 + PS417_03505 0.48 -0.6 803,544 + PS417_03505 0.48 -0.5 803,545 - PS417_03505 0.48 +0.9 803,545 - PS417_03505 0.48 +0.2 803,545 - PS417_03505 0.48 -0.4 803,745 + PS417_03505 0.67 +1.8 803,842 - PS417_03505 0.76 -0.9 803,855 + PS417_03505 0.77 +0.0 803,956 + PS417_03505 0.86 +0.4 803,956 + PS417_03505 0.86 +0.3 803,956 + PS417_03505 0.86 -0.2 803,957 - PS417_03505 0.86 +0.4 803,957 - PS417_03505 0.86 +0.2 803,957 - PS417_03505 0.86 -0.9 803,957 - PS417_03505 0.86 -0.6 804,229 + PS417_03510 0.35 +0.3 804,230 - PS417_03510 0.35 +0.3 804,230 - PS417_03510 0.35 +0.3 804,233 + PS417_03510 0.36 -0.3 804,233 + PS417_03510 0.36 -0.3 804,605 - PS417_03515 0.71 -0.9 804,752 - +1.6 804,752 - -0.3 804,890 + PS417_03520 0.11 -0.0 805,137 - PS417_03520 0.22 +0.1 805,416 + PS417_03520 0.35 -0.9 805,416 + PS417_03520 0.35 -0.7 805,426 + PS417_03520 0.36 -1.0 805,501 + PS417_03520 0.39 +0.0 805,527 - PS417_03520 0.40 -0.7 805,547 + PS417_03520 0.41 +0.1 805,547 + PS417_03520 0.41 +0.8 805,547 + PS417_03520 0.41 -0.1 805,547 + PS417_03520 0.41 +0.1 805,547 + PS417_03520 0.41 -0.4 805,548 - PS417_03520 0.41 -0.4 805,548 - PS417_03520 0.41 -0.4 805,548 - PS417_03520 0.41 -0.0 805,548 - PS417_03520 0.41 -0.4 805,548 - PS417_03520 0.41 +0.0 805,548 - PS417_03520 0.41 +0.3
Or see this region's nucleotide sequence