Strain Fitness in Pseudomonas simiae WCS417 around PS417_04935

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_04925 and PS417_04930 overlap by 4 nucleotidesPS417_04930 and PS417_04935 are separated by 17 nucleotidesPS417_04935 and PS417_04940 are separated by 10 nucleotides PS417_04925: PS417_04925 - MFS transporter, at 1,096,804 to 1,098,069 _04925 PS417_04930: PS417_04930 - hypothetical protein, at 1,098,066 to 1,098,704 _04930 PS417_04935: PS417_04935 - hypothetical protein, at 1,098,722 to 1,099,846 _04935 PS417_04940: PS417_04940 - outer membrane usher protein, at 1,099,857 to 1,102,298 _04940 Position (kb) 1098 1099 1100Strain fitness (log2 ratio) -2 -1 0 1at 1097.752 kb on + strand, within PS417_04925at 1097.753 kb on - strand, within PS417_04925at 1097.753 kb on - strand, within PS417_04925at 1098.041 kb on - strandat 1098.067 kb on + strandat 1098.073 kb on + strandat 1098.073 kb on + strandat 1098.074 kb on - strandat 1098.074 kb on - strandat 1098.074 kb on - strandat 1098.310 kb on + strand, within PS417_04930at 1098.409 kb on + strand, within PS417_04930at 1098.409 kb on + strand, within PS417_04930at 1098.410 kb on - strandat 1098.427 kb on + strand, within PS417_04930at 1098.679 kb on - strandat 1098.730 kb on - strandat 1098.821 kb on + strandat 1099.017 kb on + strand, within PS417_04935at 1099.017 kb on + strand, within PS417_04935at 1099.018 kb on - strand, within PS417_04935at 1099.020 kb on + strand, within PS417_04935at 1100.231 kb on - strand, within PS417_04940at 1100.389 kb on - strand, within PS417_04940at 1100.416 kb on + strand, within PS417_04940at 1100.447 kb on - strand, within PS417_04940at 1100.662 kb on + strand, within PS417_04940

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB
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1,097,752 + PS417_04925 0.75 +1.3
1,097,753 - PS417_04925 0.75 -0.1
1,097,753 - PS417_04925 0.75 -1.8
1,098,041 - -1.1
1,098,067 + +0.9
1,098,073 + +0.2
1,098,073 + +0.9
1,098,074 - +0.6
1,098,074 - +0.4
1,098,074 - -0.2
1,098,310 + PS417_04930 0.38 +0.6
1,098,409 + PS417_04930 0.54 +0.3
1,098,409 + PS417_04930 0.54 +0.1
1,098,410 - -0.5
1,098,427 + PS417_04930 0.56 -0.7
1,098,679 - -0.3
1,098,730 - -0.6
1,098,821 + +0.7
1,099,017 + PS417_04935 0.26 -1.0
1,099,017 + PS417_04935 0.26 -0.8
1,099,018 - PS417_04935 0.26 -0.8
1,099,020 + PS417_04935 0.26 -0.1
1,100,231 - PS417_04940 0.15 -0.4
1,100,389 - PS417_04940 0.22 +1.4
1,100,416 + PS417_04940 0.23 -0.3
1,100,447 - PS417_04940 0.24 +0.4
1,100,662 + PS417_04940 0.33 +0.2

Or see this region's nucleotide sequence