Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04925 and PS417_04930 overlap by 4 nucleotides PS417_04930 and PS417_04935 are separated by 17 nucleotides PS417_04935 and PS417_04940 are separated by 10 nucleotides
PS417_04925: PS417_04925 - MFS transporter, at 1,096,804 to 1,098,069
_04925
PS417_04930: PS417_04930 - hypothetical protein, at 1,098,066 to 1,098,704
_04930
PS417_04935: PS417_04935 - hypothetical protein, at 1,098,722 to 1,099,846
_04935
PS417_04940: PS417_04940 - outer membrane usher protein, at 1,099,857 to 1,102,298
_04940
Position (kb)
1098
1099
1100 Strain fitness (log2 ratio)
-2
-1
0
1 at 1097.752 kb on + strand, within PS417_04925 at 1097.753 kb on - strand, within PS417_04925 at 1097.753 kb on - strand, within PS417_04925 at 1098.041 kb on - strand at 1098.067 kb on + strand at 1098.073 kb on + strand at 1098.073 kb on + strand at 1098.074 kb on - strand at 1098.074 kb on - strand at 1098.074 kb on - strand at 1098.310 kb on + strand, within PS417_04930 at 1098.409 kb on + strand, within PS417_04930 at 1098.409 kb on + strand, within PS417_04930 at 1098.410 kb on - strand at 1098.427 kb on + strand, within PS417_04930 at 1098.679 kb on - strand at 1098.730 kb on - strand at 1098.821 kb on + strand at 1099.017 kb on + strand, within PS417_04935 at 1099.017 kb on + strand, within PS417_04935 at 1099.018 kb on - strand, within PS417_04935 at 1099.020 kb on + strand, within PS417_04935 at 1100.231 kb on - strand, within PS417_04940 at 1100.389 kb on - strand, within PS417_04940 at 1100.416 kb on + strand, within PS417_04940 at 1100.447 kb on - strand, within PS417_04940 at 1100.662 kb on + strand, within PS417_04940
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB remove 1,097,752 + PS417_04925 0.75 +1.3 1,097,753 - PS417_04925 0.75 -0.1 1,097,753 - PS417_04925 0.75 -1.8 1,098,041 - -1.1 1,098,067 + +0.9 1,098,073 + +0.2 1,098,073 + +0.9 1,098,074 - +0.6 1,098,074 - +0.4 1,098,074 - -0.2 1,098,310 + PS417_04930 0.38 +0.6 1,098,409 + PS417_04930 0.54 +0.3 1,098,409 + PS417_04930 0.54 +0.1 1,098,410 - -0.5 1,098,427 + PS417_04930 0.56 -0.7 1,098,679 - -0.3 1,098,730 - -0.6 1,098,821 + +0.7 1,099,017 + PS417_04935 0.26 -1.0 1,099,017 + PS417_04935 0.26 -0.8 1,099,018 - PS417_04935 0.26 -0.8 1,099,020 + PS417_04935 0.26 -0.1 1,100,231 - PS417_04940 0.15 -0.4 1,100,389 - PS417_04940 0.22 +1.4 1,100,416 + PS417_04940 0.23 -0.3 1,100,447 - PS417_04940 0.24 +0.4 1,100,662 + PS417_04940 0.33 +0.2
Or see this region's nucleotide sequence