Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26775 and PS417_26780 are separated by 52 nucleotides PS417_26780 and PS417_26785 are separated by 71 nucleotides PS417_26785 and PS417_26790 are separated by 74 nucleotides PS417_26790 and PS417_26795 are separated by 108 nucleotides
PS417_26775: PS417_26775 - thiazole synthase, at 5,783,395 to 5,784,189
_26775
PS417_26780: PS417_26780 - thiamine biosynthesis protein ThiS, at 5,784,242 to 5,784,442
_26780
PS417_26785: PS417_26785 - membrane protein, at 5,784,514 to 5,784,891
_26785
PS417_26790: PS417_26790 - peptidoglycan transglycosylase, at 5,784,966 to 5,785,688
_26790
PS417_26795: PS417_26795 - RNA polymerase sigma 70, at 5,785,797 to 5,786,651
_26795
Position (kb) 5784
5785
5786 Strain fitness (log2 ratio) -1
0
1 at 5783.973 kb on - strand, within PS417_26775 at 5784.107 kb on + strand, within PS417_26775 at 5784.141 kb on - strand at 5784.144 kb on + strand at 5784.144 kb on + strand at 5784.174 kb on + strand at 5784.633 kb on - strand, within PS417_26785 at 5784.705 kb on + strand, within PS417_26785 at 5784.705 kb on + strand, within PS417_26785 at 5784.706 kb on - strand, within PS417_26785 at 5784.706 kb on - strand, within PS417_26785 at 5784.706 kb on - strand, within PS417_26785 at 5784.706 kb on - strand, within PS417_26785 at 5784.759 kb on - strand, within PS417_26785 at 5784.927 kb on + strand at 5784.927 kb on + strand at 5784.927 kb on + strand at 5784.927 kb on + strand at 5784.927 kb on + strand at 5784.928 kb on - strand at 5784.928 kb on - strand at 5784.928 kb on - strand at 5784.928 kb on - strand at 5784.929 kb on + strand at 5784.930 kb on - strand at 5784.930 kb on - strand at 5784.965 kb on + strand at 5784.965 kb on + strand at 5785.082 kb on - strand, within PS417_26790 at 5785.341 kb on + strand, within PS417_26790 at 5785.342 kb on - strand, within PS417_26790 at 5785.524 kb on + strand, within PS417_26790 at 5785.524 kb on + strand, within PS417_26790 at 5785.582 kb on - strand, within PS417_26790 at 5785.582 kb on - strand, within PS417_26790 at 5785.734 kb on + strand at 5785.734 kb on + strand at 5786.675 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB remove 5,783,973 - PS417_26775 0.73 +0.2 5,784,107 + PS417_26775 0.90 -0.7 5,784,141 - -1.6 5,784,144 + -0.1 5,784,144 + -0.5 5,784,174 + -0.4 5,784,633 - PS417_26785 0.31 +0.4 5,784,705 + PS417_26785 0.51 -1.6 5,784,705 + PS417_26785 0.51 +0.8 5,784,706 - PS417_26785 0.51 -0.5 5,784,706 - PS417_26785 0.51 +0.0 5,784,706 - PS417_26785 0.51 -0.7 5,784,706 - PS417_26785 0.51 -0.4 5,784,759 - PS417_26785 0.65 -0.0 5,784,927 + -1.6 5,784,927 + -0.3 5,784,927 + +0.7 5,784,927 + -1.1 5,784,927 + -0.6 5,784,928 - +0.2 5,784,928 - -0.4 5,784,928 - -0.8 5,784,928 - +0.9 5,784,929 + +0.1 5,784,930 - -0.8 5,784,930 - +0.3 5,784,965 + +1.0 5,784,965 + -0.4 5,785,082 - PS417_26790 0.16 -1.2 5,785,341 + PS417_26790 0.52 -0.7 5,785,342 - PS417_26790 0.52 -0.0 5,785,524 + PS417_26790 0.77 -0.4 5,785,524 + PS417_26790 0.77 -1.2 5,785,582 - PS417_26790 0.85 +0.4 5,785,582 - PS417_26790 0.85 -0.8 5,785,734 + +0.0 5,785,734 + -0.4 5,786,675 - -1.1
Or see this region's nucleotide sequence