Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26140 and PS417_26145 are separated by 9 nucleotides PS417_26145 and PS417_26150 are separated by 171 nucleotides PS417_26150 and PS417_26155 overlap by 4 nucleotides PS417_26155 and PS417_26160 are separated by 136 nucleotides
PS417_26140: PS417_26140 - transcriptional regulator, at 5,649,558 to 5,650,226
_26140
PS417_26145: PS417_26145 - hypothetical protein, at 5,650,236 to 5,650,736
_26145
PS417_26150: PS417_26150 - acyltransferase, at 5,650,908 to 5,651,795
_26150
PS417_26155: PS417_26155 - hypothetical protein, at 5,651,792 to 5,652,364
_26155
PS417_26160: PS417_26160 - hypothetical protein, at 5,652,501 to 5,652,959
_26160
Position (kb) 5650
5651
5652 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5649.934 kb on + strand, within PS417_26140 at 5649.934 kb on + strand, within PS417_26140 at 5649.934 kb on + strand, within PS417_26140 at 5649.934 kb on + strand, within PS417_26140 at 5649.935 kb on - strand, within PS417_26140 at 5649.935 kb on - strand, within PS417_26140 at 5650.217 kb on + strand at 5650.261 kb on + strand at 5650.654 kb on + strand, within PS417_26145 at 5650.654 kb on + strand, within PS417_26145 at 5650.655 kb on - strand, within PS417_26145 at 5650.655 kb on - strand, within PS417_26145 at 5650.670 kb on - strand, within PS417_26145 at 5650.791 kb on + strand at 5650.791 kb on + strand at 5650.792 kb on - strand at 5650.792 kb on - strand at 5650.792 kb on - strand at 5650.792 kb on - strand at 5650.857 kb on + strand at 5650.949 kb on - strand at 5650.949 kb on - strand at 5651.031 kb on + strand, within PS417_26150 at 5651.032 kb on - strand, within PS417_26150 at 5651.032 kb on - strand, within PS417_26150 at 5651.032 kb on - strand, within PS417_26150 at 5651.151 kb on - strand, within PS417_26150 at 5651.158 kb on - strand, within PS417_26150 at 5651.322 kb on + strand, within PS417_26150 at 5651.431 kb on - strand, within PS417_26150 at 5651.863 kb on - strand, within PS417_26155 at 5651.863 kb on - strand, within PS417_26155 at 5652.383 kb on + strand at 5652.455 kb on + strand at 5652.500 kb on + strand at 5652.501 kb on - strand at 5652.501 kb on - strand at 5652.524 kb on - strand at 5652.612 kb on + strand, within PS417_26160 at 5652.612 kb on + strand, within PS417_26160 at 5652.612 kb on + strand at 5652.613 kb on - strand at 5652.613 kb on - strand, within PS417_26160
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB remove 5,649,934 + PS417_26140 0.56 -0.2 5,649,934 + PS417_26140 0.56 -0.7 5,649,934 + PS417_26140 0.56 -1.0 5,649,934 + PS417_26140 0.56 -0.4 5,649,935 - PS417_26140 0.56 -0.2 5,649,935 - PS417_26140 0.56 -0.4 5,650,217 + -2.9 5,650,261 + -0.2 5,650,654 + PS417_26145 0.83 +0.1 5,650,654 + PS417_26145 0.83 +0.3 5,650,655 - PS417_26145 0.84 +2.3 5,650,655 - PS417_26145 0.84 +0.3 5,650,670 - PS417_26145 0.87 +0.7 5,650,791 + +0.1 5,650,791 + -0.1 5,650,792 - +0.6 5,650,792 - -0.3 5,650,792 - -0.0 5,650,792 - +0.0 5,650,857 + -0.3 5,650,949 - -0.4 5,650,949 - +0.1 5,651,031 + PS417_26150 0.14 -1.3 5,651,032 - PS417_26150 0.14 -2.7 5,651,032 - PS417_26150 0.14 +0.4 5,651,032 - PS417_26150 0.14 -0.3 5,651,151 - PS417_26150 0.27 +2.3 5,651,158 - PS417_26150 0.28 -0.5 5,651,322 + PS417_26150 0.47 -0.8 5,651,431 - PS417_26150 0.59 -1.3 5,651,863 - PS417_26155 0.12 -1.0 5,651,863 - PS417_26155 0.12 -0.2 5,652,383 + +1.5 5,652,455 + -0.1 5,652,500 + +0.6 5,652,501 - +0.4 5,652,501 - -0.1 5,652,524 - -1.0 5,652,612 + PS417_26160 0.24 -0.9 5,652,612 + PS417_26160 0.24 -0.2 5,652,612 + +0.7 5,652,613 - -0.5 5,652,613 - PS417_26160 0.24 -0.6
Or see this region's nucleotide sequence