Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02180 and PS417_02185 are separated by 203 nucleotides PS417_02185 and PS417_02190 are separated by 21 nucleotides PS417_02190 and PS417_02200 are separated by 134 nucleotides
PS417_02180: PS417_02180 - proline:sodium symporter PutP, at 491,461 to 492,945
_02180
PS417_02185: PS417_02185 - type IV secretion protein Rhs, at 493,149 to 495,125
_02185
PS417_02190: PS417_02190 - hypothetical protein, at 495,147 to 495,830
_02190
PS417_02200: PS417_02200 - lactate dehydrogenase, at 495,965 to 496,801
_02200
Position (kb) 493
494
495
496 Strain fitness (log2 ratio) -2
-1
0
1 at 492.343 kb on + strand, within PS417_02180 at 492.343 kb on + strand, within PS417_02180 at 492.343 kb on + strand, within PS417_02180 at 492.895 kb on - strand at 492.944 kb on - strand at 492.944 kb on - strand at 493.026 kb on - strand at 493.178 kb on + strand at 493.217 kb on - strand at 493.470 kb on - strand, within PS417_02185 at 493.470 kb on - strand, within PS417_02185 at 493.737 kb on + strand, within PS417_02185 at 493.738 kb on - strand, within PS417_02185 at 493.739 kb on + strand, within PS417_02185 at 493.799 kb on - strand, within PS417_02185 at 493.834 kb on - strand, within PS417_02185 at 493.948 kb on - strand, within PS417_02185 at 494.483 kb on + strand, within PS417_02185 at 494.599 kb on - strand, within PS417_02185 at 494.773 kb on + strand, within PS417_02185 at 494.773 kb on + strand, within PS417_02185 at 494.839 kb on + strand, within PS417_02185 at 495.307 kb on - strand, within PS417_02190 at 495.529 kb on + strand, within PS417_02190 at 495.529 kb on + strand, within PS417_02190 at 495.529 kb on + strand, within PS417_02190 at 495.529 kb on + strand, within PS417_02190 at 495.530 kb on - strand, within PS417_02190 at 495.625 kb on + strand, within PS417_02190 at 495.637 kb on + strand, within PS417_02190 at 495.720 kb on + strand, within PS417_02190 at 495.720 kb on + strand, within PS417_02190 at 495.763 kb on - strand at 495.937 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB remove 492,343 + PS417_02180 0.59 +0.3 492,343 + PS417_02180 0.59 -0.1 492,343 + PS417_02180 0.59 +0.1 492,895 - -0.1 492,944 - -0.4 492,944 - +0.8 493,026 - +0.4 493,178 + -1.2 493,217 - +1.0 493,470 - PS417_02185 0.16 -0.5 493,470 - PS417_02185 0.16 -0.8 493,737 + PS417_02185 0.30 -0.6 493,738 - PS417_02185 0.30 -1.6 493,739 + PS417_02185 0.30 +0.5 493,799 - PS417_02185 0.33 -0.0 493,834 - PS417_02185 0.35 -0.4 493,948 - PS417_02185 0.40 -0.7 494,483 + PS417_02185 0.67 -0.5 494,599 - PS417_02185 0.73 -0.6 494,773 + PS417_02185 0.82 -1.6 494,773 + PS417_02185 0.82 -0.5 494,839 + PS417_02185 0.85 +0.2 495,307 - PS417_02190 0.23 -1.3 495,529 + PS417_02190 0.56 +1.4 495,529 + PS417_02190 0.56 -0.1 495,529 + PS417_02190 0.56 -0.3 495,529 + PS417_02190 0.56 +0.0 495,530 - PS417_02190 0.56 +1.4 495,625 + PS417_02190 0.70 -2.2 495,637 + PS417_02190 0.72 +0.7 495,720 + PS417_02190 0.84 -0.4 495,720 + PS417_02190 0.84 -0.0 495,763 - +0.8 495,937 - -1.1
Or see this region's nucleotide sequence