Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01760 and PS417_01765 are separated by 12 nucleotides PS417_01765 and PS417_01770 are separated by 129 nucleotides PS417_01770 and PS417_01775 are separated by 153 nucleotides
PS417_01760: PS417_01760 - imidazolonepropionase, at 391,604 to 392,809
_01760
PS417_01765: PS417_01765 - N-formylglutamate amidohydrolase, at 392,822 to 393,622
_01765
PS417_01770: PS417_01770 - glycine/betaine ABC transporter substrate-binding protein, at 393,752 to 394,687
_01770
PS417_01775: PS417_01775 - lipase, at 394,841 to 395,770
_01775
Position (kb) 393
394
395 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 392.817 kb on + strand at 392.817 kb on + strand at 392.817 kb on + strand at 392.818 kb on - strand at 392.818 kb on - strand at 392.818 kb on - strand at 392.818 kb on - strand at 393.687 kb on - strand at 393.721 kb on + strand at 393.722 kb on - strand at 393.726 kb on + strand at 393.726 kb on + strand at 393.982 kb on + strand, within PS417_01770 at 394.109 kb on + strand, within PS417_01770 at 394.181 kb on + strand, within PS417_01770 at 394.181 kb on + strand, within PS417_01770 at 394.407 kb on + strand, within PS417_01770 at 394.407 kb on + strand, within PS417_01770 at 394.408 kb on - strand, within PS417_01770 at 394.666 kb on - strand at 394.754 kb on + strand at 394.755 kb on - strand at 394.844 kb on + strand at 394.935 kb on - strand, within PS417_01775 at 394.935 kb on - strand, within PS417_01775 at 395.025 kb on - strand, within PS417_01775 at 395.072 kb on + strand, within PS417_01775 at 395.072 kb on + strand, within PS417_01775 at 395.073 kb on - strand, within PS417_01775 at 395.073 kb on - strand, within PS417_01775 at 395.073 kb on - strand, within PS417_01775 at 395.073 kb on - strand, within PS417_01775 at 395.073 kb on - strand, within PS417_01775 at 395.073 kb on - strand, within PS417_01775 at 395.075 kb on - strand, within PS417_01775 at 395.076 kb on + strand, within PS417_01775 at 395.076 kb on + strand, within PS417_01775 at 395.077 kb on - strand, within PS417_01775 at 395.376 kb on + strand, within PS417_01775 at 395.376 kb on + strand, within PS417_01775 at 395.377 kb on - strand, within PS417_01775 at 395.471 kb on + strand, within PS417_01775 at 395.472 kb on - strand, within PS417_01775 at 395.472 kb on - strand, within PS417_01775 at 395.483 kb on + strand at 395.609 kb on + strand, within PS417_01775
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB remove 392,817 + -0.5 392,817 + +0.2 392,817 + -2.0 392,818 - -1.7 392,818 - +1.2 392,818 - -0.5 392,818 - -0.4 393,687 - +1.6 393,721 + -0.3 393,722 - +0.2 393,726 + -0.2 393,726 + -0.1 393,982 + PS417_01770 0.25 -0.4 394,109 + PS417_01770 0.38 +0.2 394,181 + PS417_01770 0.46 +0.4 394,181 + PS417_01770 0.46 -0.1 394,407 + PS417_01770 0.70 -3.0 394,407 + PS417_01770 0.70 +0.9 394,408 - PS417_01770 0.70 -0.6 394,666 - -0.3 394,754 + +0.7 394,755 - -0.6 394,844 + -0.5 394,935 - PS417_01775 0.10 -1.0 394,935 - PS417_01775 0.10 +0.1 395,025 - PS417_01775 0.20 -0.4 395,072 + PS417_01775 0.25 +0.2 395,072 + PS417_01775 0.25 -0.7 395,073 - PS417_01775 0.25 -1.1 395,073 - PS417_01775 0.25 +0.2 395,073 - PS417_01775 0.25 -0.7 395,073 - PS417_01775 0.25 +0.2 395,073 - PS417_01775 0.25 -1.4 395,073 - PS417_01775 0.25 -0.0 395,075 - PS417_01775 0.25 -1.0 395,076 + PS417_01775 0.25 +0.5 395,076 + PS417_01775 0.25 -0.4 395,077 - PS417_01775 0.25 -0.1 395,376 + PS417_01775 0.58 +0.1 395,376 + PS417_01775 0.58 +0.1 395,377 - PS417_01775 0.58 -0.3 395,471 + PS417_01775 0.68 -2.7 395,472 - PS417_01775 0.68 -0.0 395,472 - PS417_01775 0.68 -1.0 395,483 + +0.0 395,609 + PS417_01775 0.83 -0.3
Or see this region's nucleotide sequence