Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03980 and PS417_03985 are separated by 99 nucleotides PS417_03985 and PS417_03990 are separated by 136 nucleotides
PS417_03980: PS417_03980 - alkaline phosphatase, at 891,073 to 892,614
_03980
PS417_03985: PS417_03985 - flavodoxin, at 892,714 to 895,239
_03985
PS417_03990: PS417_03990 - ligand-gated channel protein, at 895,376 to 897,661
_03990
Position (kb) 892
893
894
895
896 Strain fitness (log2 ratio) -1
0
1
2
3 at 891.733 kb on + strand, within PS417_03980 at 891.914 kb on - strand, within PS417_03980 at 891.914 kb on - strand, within PS417_03980 at 891.973 kb on + strand, within PS417_03980 at 891.974 kb on - strand, within PS417_03980 at 892.143 kb on + strand, within PS417_03980 at 892.158 kb on - strand at 892.172 kb on + strand, within PS417_03980 at 892.172 kb on + strand, within PS417_03980 at 892.296 kb on - strand, within PS417_03980 at 892.318 kb on + strand, within PS417_03980 at 892.336 kb on + strand, within PS417_03980 at 892.336 kb on + strand, within PS417_03980 at 892.529 kb on + strand at 892.530 kb on - strand at 892.530 kb on - strand at 892.530 kb on - strand at 892.530 kb on - strand at 892.530 kb on - strand at 892.663 kb on + strand at 892.777 kb on + strand at 892.777 kb on + strand at 892.778 kb on - strand at 892.778 kb on - strand at 892.778 kb on - strand at 892.835 kb on + strand at 892.835 kb on + strand at 892.836 kb on - strand at 892.836 kb on - strand at 892.863 kb on + strand at 892.864 kb on - strand at 892.864 kb on - strand at 893.301 kb on - strand, within PS417_03985 at 893.564 kb on - strand, within PS417_03985 at 893.810 kb on + strand, within PS417_03985 at 893.811 kb on - strand, within PS417_03985 at 893.855 kb on - strand, within PS417_03985 at 893.855 kb on - strand, within PS417_03985 at 894.251 kb on + strand, within PS417_03985 at 894.401 kb on + strand, within PS417_03985 at 894.404 kb on + strand, within PS417_03985 at 894.405 kb on - strand, within PS417_03985 at 894.449 kb on + strand, within PS417_03985 at 894.480 kb on - strand, within PS417_03985 at 894.480 kb on - strand, within PS417_03985 at 894.480 kb on - strand, within PS417_03985 at 894.483 kb on + strand, within PS417_03985 at 894.503 kb on + strand, within PS417_03985 at 894.503 kb on + strand at 894.504 kb on - strand, within PS417_03985 at 894.602 kb on + strand, within PS417_03985 at 894.602 kb on + strand, within PS417_03985 at 894.693 kb on + strand, within PS417_03985 at 894.693 kb on + strand, within PS417_03985 at 894.693 kb on + strand, within PS417_03985 at 894.694 kb on - strand, within PS417_03985 at 894.908 kb on + strand, within PS417_03985 at 894.908 kb on + strand, within PS417_03985 at 894.909 kb on - strand, within PS417_03985 at 894.909 kb on - strand, within PS417_03985 at 894.920 kb on + strand, within PS417_03985 at 895.106 kb on - strand at 895.265 kb on - strand at 895.268 kb on + strand at 895.268 kb on + strand at 895.269 kb on - strand at 895.269 kb on - strand at 895.367 kb on + strand at 895.367 kb on + strand at 895.367 kb on + strand at 895.377 kb on + strand at 895.378 kb on - strand at 895.408 kb on + strand at 895.458 kb on + strand at 895.458 kb on + strand at 895.458 kb on + strand at 895.458 kb on + strand at 895.518 kb on + strand at 895.545 kb on + strand at 895.546 kb on - strand at 895.554 kb on - strand at 895.554 kb on - strand at 895.557 kb on + strand at 895.557 kb on + strand at 895.558 kb on - strand at 895.638 kb on + strand, within PS417_03990 at 895.638 kb on + strand, within PS417_03990 at 895.761 kb on + strand, within PS417_03990 at 895.762 kb on - strand, within PS417_03990 at 895.854 kb on + strand, within PS417_03990 at 895.854 kb on + strand, within PS417_03990 at 896.074 kb on - strand, within PS417_03990 at 896.082 kb on + strand, within PS417_03990 at 896.082 kb on + strand, within PS417_03990 at 896.082 kb on + strand, within PS417_03990 at 896.082 kb on + strand, within PS417_03990 at 896.082 kb on + strand, within PS417_03990 at 896.082 kb on + strand, within PS417_03990 at 896.083 kb on - strand, within PS417_03990 at 896.083 kb on - strand, within PS417_03990 at 896.083 kb on - strand, within PS417_03990 at 896.083 kb on - strand, within PS417_03990
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB remove 891,733 + PS417_03980 0.43 +1.5 891,914 - PS417_03980 0.55 +0.3 891,914 - PS417_03980 0.55 +0.5 891,973 + PS417_03980 0.58 +0.2 891,974 - PS417_03980 0.58 +0.4 892,143 + PS417_03980 0.69 +0.1 892,158 - +1.3 892,172 + PS417_03980 0.71 -0.1 892,172 + PS417_03980 0.71 -0.5 892,296 - PS417_03980 0.79 +0.0 892,318 + PS417_03980 0.81 +0.6 892,336 + PS417_03980 0.82 +0.8 892,336 + PS417_03980 0.82 +0.7 892,529 + +0.4 892,530 - +0.2 892,530 - +0.3 892,530 - +0.4 892,530 - -0.2 892,530 - +0.6 892,663 + +0.2 892,777 + +0.4 892,777 + -0.4 892,778 - -0.0 892,778 - +0.3 892,778 - -0.1 892,835 + -0.1 892,835 + +0.0 892,836 - -0.6 892,836 - +0.4 892,863 + +0.4 892,864 - -0.3 892,864 - -0.2 893,301 - PS417_03985 0.23 +0.3 893,564 - PS417_03985 0.34 -0.4 893,810 + PS417_03985 0.43 +0.3 893,811 - PS417_03985 0.43 +0.1 893,855 - PS417_03985 0.45 -0.9 893,855 - PS417_03985 0.45 +0.0 894,251 + PS417_03985 0.61 -0.6 894,401 + PS417_03985 0.67 +1.1 894,404 + PS417_03985 0.67 -0.4 894,405 - PS417_03985 0.67 -0.9 894,449 + PS417_03985 0.69 -0.7 894,480 - PS417_03985 0.70 -0.1 894,480 - PS417_03985 0.70 -0.4 894,480 - PS417_03985 0.70 -1.2 894,483 + PS417_03985 0.70 -1.1 894,503 + PS417_03985 0.71 +0.5 894,503 + -0.3 894,504 - PS417_03985 0.71 -0.3 894,602 + PS417_03985 0.75 -0.2 894,602 + PS417_03985 0.75 -0.9 894,693 + PS417_03985 0.78 -0.3 894,693 + PS417_03985 0.78 +0.7 894,693 + PS417_03985 0.78 -0.1 894,694 - PS417_03985 0.78 -0.3 894,908 + PS417_03985 0.87 -1.0 894,908 + PS417_03985 0.87 -0.3 894,909 - PS417_03985 0.87 +0.9 894,909 - PS417_03985 0.87 -0.4 894,920 + PS417_03985 0.87 +1.0 895,106 - +0.5 895,265 - +1.5 895,268 + +1.9 895,268 + +0.2 895,269 - -0.6 895,269 - +0.5 895,367 + +0.7 895,367 + -0.8 895,367 + -0.3 895,377 + +0.2 895,378 - -1.1 895,408 + -0.0 895,458 + -0.6 895,458 + -0.8 895,458 + +3.2 895,458 + +0.8 895,518 + -0.4 895,545 + -0.7 895,546 - +0.2 895,554 - +0.7 895,554 - -0.1 895,557 + +0.4 895,557 + +0.2 895,558 - -0.5 895,638 + PS417_03990 0.11 -0.8 895,638 + PS417_03990 0.11 -1.5 895,761 + PS417_03990 0.17 +0.5 895,762 - PS417_03990 0.17 -0.2 895,854 + PS417_03990 0.21 +0.7 895,854 + PS417_03990 0.21 -0.1 896,074 - PS417_03990 0.31 -0.2 896,082 + PS417_03990 0.31 +0.4 896,082 + PS417_03990 0.31 +1.0 896,082 + PS417_03990 0.31 -0.4 896,082 + PS417_03990 0.31 +0.1 896,082 + PS417_03990 0.31 +0.0 896,082 + PS417_03990 0.31 +0.2 896,083 - PS417_03990 0.31 +0.8 896,083 - PS417_03990 0.31 -0.7 896,083 - PS417_03990 0.31 -0.5 896,083 - PS417_03990 0.31 +0.4
Or see this region's nucleotide sequence