Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00825 and PS417_00830 are separated by 5 nucleotides PS417_00830 and PS417_00835 are separated by 483 nucleotides
PS417_00825: PS417_00825 - recombinase RecF, at 182,395 to 183,564
_00825
PS417_00830: PS417_00830 - hypothetical protein, at 183,570 to 184,313
_00830
PS417_00835: PS417_00835 - hypothetical protein, at 184,797 to 185,834
_00835
Position (kb) 183
184
185 Strain fitness (log2 ratio) -1
0
1
2 at 182.639 kb on - strand, within PS417_00825 at 182.695 kb on + strand, within PS417_00825 at 182.736 kb on + strand, within PS417_00825 at 183.253 kb on - strand, within PS417_00825 at 183.683 kb on - strand, within PS417_00830 at 183.695 kb on - strand, within PS417_00830 at 183.697 kb on + strand, within PS417_00830 at 183.737 kb on + strand at 184.121 kb on - strand, within PS417_00830 at 184.121 kb on - strand, within PS417_00830 at 184.261 kb on - strand at 184.261 kb on - strand at 184.355 kb on + strand at 184.355 kb on + strand at 184.356 kb on - strand at 184.359 kb on + strand at 184.382 kb on - strand at 184.501 kb on + strand at 184.570 kb on - strand at 184.625 kb on - strand at 184.626 kb on + strand at 184.669 kb on + strand at 184.725 kb on + strand at 185.102 kb on + strand, within PS417_00835 at 185.158 kb on - strand, within PS417_00835
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB remove 182,639 - PS417_00825 0.21 +2.6 182,695 + PS417_00825 0.26 +0.5 182,736 + PS417_00825 0.29 +0.2 183,253 - PS417_00825 0.73 +0.0 183,683 - PS417_00830 0.15 +0.9 183,695 - PS417_00830 0.17 +0.9 183,697 + PS417_00830 0.17 +0.4 183,737 + +0.2 184,121 - PS417_00830 0.74 +0.3 184,121 - PS417_00830 0.74 +0.5 184,261 - +1.5 184,261 - -0.7 184,355 + -0.2 184,355 + +0.4 184,356 - -0.1 184,359 + +1.4 184,382 - +2.2 184,501 + +0.3 184,570 - +0.2 184,625 - -0.3 184,626 + +0.3 184,669 + +0.2 184,725 + -0.8 185,102 + PS417_00835 0.29 +1.8 185,158 - PS417_00835 0.35 -0.8
Or see this region's nucleotide sequence