Strain Fitness in Pseudomonas simiae WCS417 around PS417_28090

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
6,061,714	-		PS417_28085	0.20	-1.0
6,061,714	-		PS417_28085	0.20	+0.6
6,061,806	+		PS417_28085	0.29	-1.7
6,061,806	+		PS417_28085	0.29	+0.3
6,061,900	-		PS417_28085	0.39	-0.9
6,061,900	-		PS417_28085	0.39	-0.4
6,061,900	-		PS417_28085	0.39	-0.5
6,061,932	+		PS417_28085	0.42	-0.3
6,061,932	+		PS417_28085	0.42	-1.5
6,061,933	-		PS417_28085	0.42	-0.6
6,061,939	-		PS417_28085	0.43	-0.8
6,061,939	-		PS417_28085	0.43	-0.3
6,062,163	+		PS417_28085	0.65	+0.3
6,062,163	+		PS417_28085	0.65	-0.1
6,062,164	-		PS417_28085	0.66	-0.2
6,062,398	+		PS417_28085	0.89	-0.3
6,062,404	-		PS417_28085	0.90	-0.4
6,062,404	-		PS417_28085	0.90	-0.4
6,062,527	+				-0.3
6,062,527	+				-0.2
6,062,527	+				-0.3
6,062,527	+				-1.3
6,062,570	+				-0.1
6,062,570	+				-0.4
6,062,570	+				-0.3
6,062,571	-				-0.2
6,062,590	+				+0.1
6,062,705	+				-0.0
6,062,747	+				-0.6
6,062,748	-				-0.2
6,062,751	-				-0.7
6,062,751	-				+1.4
6,062,822	+		PS417_28090	0.11	-0.1
6,063,335	+		PS417_28090	0.51	+0.0
6,063,336	-		PS417_28090	0.51	-1.3
6,063,336	-		PS417_28090	0.51	-0.4
6,063,412	-		PS417_28090	0.57	-1.2
6,063,413	+		PS417_28090	0.57	-0.2
6,063,413	+		PS417_28090	0.57	-1.8
6,063,914	+				+0.3
6,063,972	+				+0.7
6,063,972	+				-0.5
6,063,972	+				+0.5
6,063,972	+				+0.6
6,063,972	+				-0.3
6,063,973	-				+0.2
6,063,973	-				+0.4
6,063,973	-				+0.6
6,063,973	-				-0.7
6,063,973	-				+0.2
6,063,987	+				-0.5
6,063,987	+				-0.1
6,063,987	+				+0.4
6,063,988	-				+1.4
6,063,989	+				-0.0
6,063,990	-				-0.8
6,063,990	-				+0.6
6,063,990	-				+1.3
6,063,990	-				-0.0
6,063,992	+				-0.2
6,064,035	-				+0.5
6,064,035	-				+0.6
6,064,078	+				-0.3
6,064,078	+				+0.0
6,064,079	-				-1.3
6,064,312	-				+0.5
6,064,344	+				-1.5
6,064,344	+				-0.2
6,064,344	+				+1.4
6,064,344	+				-0.3
6,064,344	+				-1.0
6,064,344	+				-0.3
6,064,344	+				-1.2
6,064,345	-				-1.1
6,064,345	-				-1.0
6,064,345	-				+0.5
6,064,393	-				-1.0
6,064,773	+		PS417_28095	0.85	-0.4