Strain Fitness in Pseudomonas simiae WCS417 around PS417_13475

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
2,964,436	+		PS417_13470	0.31	+0.3
2,964,436	+				-0.7
2,964,437	-		PS417_13470	0.31	+0.3
2,964,437	-		PS417_13470	0.31	+1.2
2,964,437	-		PS417_13470	0.31	-1.1
2,964,437	-		PS417_13470	0.31	+0.5
2,964,439	+		PS417_13470	0.31	-0.8
2,964,440	-		PS417_13470	0.31	-1.2
2,964,739	+		PS417_13470	0.54	+1.5
2,964,739	+		PS417_13470	0.54	+0.1
2,964,740	-				-0.6
2,964,818	-		PS417_13470	0.60	+1.0
2,964,866	-				-0.3
2,965,222	+		PS417_13470	0.90	+1.1
2,965,223	-				-0.1
2,965,256	-				+0.4
2,965,262	-				-2.2
2,965,289	-				-1.4
2,965,354	+				-1.0
2,965,355	-				+0.5
2,965,362	+				+0.1
2,965,373	+				+0.0
2,965,374	-				-0.4
2,965,374	-				+1.3
2,965,386	+				-0.1
2,965,561	+				-0.0
2,965,561	+				-0.3
2,965,576	-				+0.9
2,965,651	+				-1.9
2,965,679	-				-0.0
2,965,679	-				-1.7
2,965,741	-		PS417_13475	0.12	-0.1
2,965,801	+		PS417_13475	0.14	+0.3
2,965,802	-				+3.0
2,965,816	+		PS417_13475	0.15	+0.4
2,965,827	+		PS417_13475	0.15	-0.2
2,965,891	+		PS417_13475	0.17	-0.6
2,965,891	+		PS417_13475	0.17	-0.1
2,966,005	+		PS417_13475	0.21	-0.6
2,966,005	+		PS417_13475	0.21	+0.5
2,966,006	-		PS417_13475	0.21	+1.3
2,966,006	-		PS417_13475	0.21	-1.2
2,966,192	-		PS417_13475	0.27	+0.2
2,966,216	-		PS417_13475	0.28	+0.3
2,966,350	+		PS417_13475	0.33	-1.3
2,966,350	+		PS417_13475	0.33	-2.3
2,966,351	-		PS417_13475	0.33	+0.2
2,966,351	-		PS417_13475	0.33	-0.1
2,966,351	-		PS417_13475	0.33	-1.6
2,966,351	-		PS417_13475	0.33	-0.4
2,966,351	-		PS417_13475	0.33	-0.0
2,966,352	+		PS417_13475	0.33	-2.3
2,966,352	+		PS417_13475	0.33	+0.6
2,966,353	-				+0.3
2,966,353	-		PS417_13475	0.33	-0.7
2,966,439	-		PS417_13475	0.36	-2.0
2,966,499	+		PS417_13475	0.38	-1.5
2,966,499	+		PS417_13475	0.38	-0.5
2,966,534	+		PS417_13475	0.39	-0.1
2,966,534	+		PS417_13475	0.39	+1.3
2,966,535	-		PS417_13475	0.39	-0.8
2,966,681	-		PS417_13475	0.44	-0.4
2,966,681	-		PS417_13475	0.44	+0.0
2,966,726	-		PS417_13475	0.45	-0.4
2,966,726	-		PS417_13475	0.45	+0.1
2,966,786	-				+1.6
2,966,992	+		PS417_13475	0.54	-0.1
2,967,140	-		PS417_13475	0.59	-1.0
2,967,140	-		PS417_13475	0.59	+0.5
2,967,200	-		PS417_13475	0.61	+0.2
2,967,425	-		PS417_13475	0.69	-0.8
2,967,724	+		PS417_13475	0.79	+0.2
2,967,809	+		PS417_13475	0.82	-0.4
2,967,949	+		PS417_13475	0.87	-0.7
2,967,949	+		PS417_13475	0.87	+0.3
2,967,949	+		PS417_13475	0.87	+0.4
2,967,949	+		PS417_13475	0.87	-0.3
2,967,949	+		PS417_13475	0.87	-1.1
2,968,277	-				-0.2
2,968,277	-				+1.5
2,968,277	-				-0.2
2,968,352	+				-0.2
2,968,353	-				+0.1
2,968,366	-				+0.4
2,968,394	-				+0.3
2,968,410	+				+0.5
2,968,414	+				-0.8
2,968,470	-				-2.1
2,968,480	-				+0.3
2,968,523	+				-0.4
2,968,523	+				-0.5
2,968,524	-				-0.3
2,968,619	+				-1.5
2,968,620	-				+1.0
2,968,745	+		PS417_13480	0.11	+0.5
2,968,746	-		PS417_13480	0.12	-0.5
2,968,757	+		PS417_13480	0.12	-0.6
2,968,982	+		PS417_13480	0.19	-0.0
2,968,982	+		PS417_13480	0.19	-1.3
2,968,982	+		PS417_13480	0.19	+0.6
2,968,983	-		PS417_13480	0.19	+0.1
2,968,983	-		PS417_13480	0.19	-0.8
2,969,235	-		PS417_13480	0.27	+0.0