Strain Fitness in Pseudomonas simiae WCS417 around PS417_13440

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
2,955,172	+				+0.8
2,955,172	+				+0.2
2,955,221	-				-0.9
2,955,627	+		PS417_13435	0.56	-0.0
2,955,627	+		PS417_13435	0.56	+0.3
2,955,627	+		PS417_13435	0.56	-0.3
2,955,639	+		PS417_13435	0.58	-0.3
2,955,685	-		PS417_13435	0.64	+0.3
2,955,753	+		PS417_13435	0.72	-0.3
2,955,754	-		PS417_13435	0.72	+0.0
2,955,754	-		PS417_13435	0.72	-1.7
2,955,832	-		PS417_13435	0.82	+0.1
2,956,047	-				-0.5
2,956,105	+				-2.2
2,956,106	-				-0.2
2,956,171	-				-0.4
2,956,171	-				-0.1
2,956,370	-		PS417_13440	0.15	+0.3
2,956,411	+		PS417_13440	0.18	-1.2
2,956,411	+		PS417_13440	0.18	-1.1
2,956,412	-		PS417_13440	0.18	-1.4
2,956,522	+		PS417_13440	0.26	+0.4
2,956,522	+		PS417_13440	0.26	-0.5
2,956,592	-		PS417_13440	0.31	+0.2
2,956,810	+		PS417_13440	0.47	-1.0
2,956,810	+		PS417_13440	0.47	-0.3
2,956,811	-		PS417_13440	0.47	-0.3
2,956,819	+		PS417_13440	0.47	-0.1
2,957,103	-				+2.3
2,957,196	+		PS417_13440	0.75	-0.1
2,957,291	-		PS417_13440	0.82	+0.1
2,957,407	+				+0.1
2,957,411	+				-0.7
2,957,411	+				-2.3
2,957,411	+				+0.4
2,957,412	-				-1.4
2,957,412	-				-0.7
2,957,491	+				-0.7
2,957,533	+				-0.0
2,957,902	+		PS417_13445	0.32	-0.3
2,958,342	+				+0.7
2,958,480	+		PS417_13445	0.85	-2.1