Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04295 and PS417_04300 are separated by 150 nucleotides PS417_04300 and PS417_04305 overlap by 8 nucleotides PS417_04305 and PS417_04310 are separated by 27 nucleotides PS417_04310 and PS417_04315 are separated by 1 nucleotides
PS417_04295: PS417_04295 - peptidase PmbA, at 963,706 to 965,052
_04295
PS417_04300: PS417_04300 - FagA protein, at 965,203 to 965,598
_04300
PS417_04305: PS417_04305 - aspartate ammonia-lyase, at 965,591 to 966,967
_04305
PS417_04310: PS417_04310 - hypothetical protein, at 966,995 to 967,423
_04310
PS417_04315: PS417_04315 - superoxide dismutase, at 967,425 to 968,036
_04315
Position (kb) 965
966
967 Strain fitness (log2 ratio) -2
-1
0
1
2 at 964.608 kb on + strand, within PS417_04295 at 964.678 kb on + strand, within PS417_04295 at 964.678 kb on + strand, within PS417_04295 at 964.679 kb on - strand, within PS417_04295 at 964.679 kb on - strand, within PS417_04295 at 964.679 kb on - strand, within PS417_04295 at 964.679 kb on - strand, within PS417_04295 at 964.693 kb on + strand, within PS417_04295 at 964.693 kb on + strand, within PS417_04295 at 964.694 kb on - strand, within PS417_04295 at 964.694 kb on - strand, within PS417_04295 at 964.694 kb on - strand, within PS417_04295 at 964.861 kb on + strand, within PS417_04295 at 964.862 kb on - strand, within PS417_04295 at 965.074 kb on + strand at 965.308 kb on + strand, within PS417_04300 at 965.309 kb on - strand, within PS417_04300 at 965.309 kb on - strand, within PS417_04300 at 965.309 kb on - strand, within PS417_04300 at 965.596 kb on + strand at 965.596 kb on + strand at 965.596 kb on + strand at 965.597 kb on - strand at 965.654 kb on + strand at 965.654 kb on + strand at 965.654 kb on + strand at 965.654 kb on + strand at 965.655 kb on - strand at 965.655 kb on - strand at 965.655 kb on - strand at 965.891 kb on - strand, within PS417_04305 at 966.225 kb on + strand, within PS417_04305 at 966.965 kb on + strand at 967.039 kb on + strand, within PS417_04310 at 967.039 kb on + strand, within PS417_04310 at 967.040 kb on - strand, within PS417_04310 at 967.073 kb on + strand, within PS417_04310 at 967.073 kb on + strand, within PS417_04310 at 967.074 kb on - strand, within PS417_04310 at 967.424 kb on + strand at 967.425 kb on - strand at 967.431 kb on + strand at 967.431 kb on + strand at 967.432 kb on - strand at 967.432 kb on - strand at 967.432 kb on - strand at 967.433 kb on + strand at 967.433 kb on + strand at 967.458 kb on + strand at 967.478 kb on + strand at 967.507 kb on - strand, within PS417_04315 at 967.507 kb on - strand, within PS417_04315 at 967.507 kb on - strand, within PS417_04315 at 967.527 kb on + strand, within PS417_04315 at 967.527 kb on + strand, within PS417_04315 at 967.935 kb on + strand, within PS417_04315 at 967.936 kb on - strand, within PS417_04315 at 967.936 kb on - strand, within PS417_04315 at 967.945 kb on - strand, within PS417_04315 at 967.966 kb on - strand, within PS417_04315
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X remove 964,608 + PS417_04295 0.67 +0.6 964,678 + PS417_04295 0.72 -0.1 964,678 + PS417_04295 0.72 -1.5 964,679 - PS417_04295 0.72 -0.6 964,679 - PS417_04295 0.72 +0.3 964,679 - PS417_04295 0.72 -1.2 964,679 - PS417_04295 0.72 +0.1 964,693 + PS417_04295 0.73 -0.0 964,693 + PS417_04295 0.73 -0.9 964,694 - PS417_04295 0.73 -1.2 964,694 - PS417_04295 0.73 -1.4 964,694 - PS417_04295 0.73 -1.5 964,861 + PS417_04295 0.86 +0.4 964,862 - PS417_04295 0.86 +0.1 965,074 + +0.1 965,308 + PS417_04300 0.27 -0.4 965,309 - PS417_04300 0.27 +0.0 965,309 - PS417_04300 0.27 +1.2 965,309 - PS417_04300 0.27 +0.2 965,596 + -2.2 965,596 + +0.7 965,596 + +0.1 965,597 - -0.8 965,654 + +1.1 965,654 + +0.5 965,654 + +1.1 965,654 + -0.2 965,655 - +0.5 965,655 - -0.4 965,655 - -0.4 965,891 - PS417_04305 0.22 -1.7 966,225 + PS417_04305 0.46 -1.5 966,965 + +0.7 967,039 + PS417_04310 0.10 +0.2 967,039 + PS417_04310 0.10 -0.2 967,040 - PS417_04310 0.10 +0.3 967,073 + PS417_04310 0.18 -0.6 967,073 + PS417_04310 0.18 +2.5 967,074 - PS417_04310 0.18 -0.0 967,424 + -0.2 967,425 - -0.5 967,431 + +1.5 967,431 + -1.1 967,432 - -1.0 967,432 - +0.2 967,432 - -0.1 967,433 + +0.4 967,433 + -0.1 967,458 + +0.0 967,478 + +0.3 967,507 - PS417_04315 0.13 -1.1 967,507 - PS417_04315 0.13 -1.2 967,507 - PS417_04315 0.13 -0.6 967,527 + PS417_04315 0.17 +0.3 967,527 + PS417_04315 0.17 -0.8 967,935 + PS417_04315 0.83 -0.5 967,936 - PS417_04315 0.83 +0.8 967,936 - PS417_04315 0.83 +0.6 967,945 - PS417_04315 0.85 +0.0 967,966 - PS417_04315 0.88 +0.6
Or see this region's nucleotide sequence