Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03805 and PS417_03810 overlap by 14 nucleotides PS417_03810 and PS417_03815 are separated by 124 nucleotides PS417_03815 and PS417_03820 are separated by 149 nucleotides
PS417_03805: PS417_03805 - D-amino acid oxidase, at 858,953 to 860,062
_03805
PS417_03810: PS417_03810 - hypothetical protein, at 860,049 to 860,282
_03810
PS417_03815: PS417_03815 - DNA transporter, at 860,407 to 861,432
_03815
PS417_03820: PS417_03820 - ribosomal large subunit pseudouridine synthase D, at 861,582 to 862,544
_03820
Position (kb) 860
861
862 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 859.506 kb on + strand, within PS417_03805 at 859.506 kb on + strand, within PS417_03805 at 859.507 kb on - strand, within PS417_03805 at 859.507 kb on - strand, within PS417_03805 at 859.592 kb on - strand, within PS417_03805 at 859.592 kb on - strand, within PS417_03805 at 859.592 kb on - strand, within PS417_03805 at 859.889 kb on + strand, within PS417_03805 at 859.889 kb on + strand, within PS417_03805 at 859.890 kb on - strand, within PS417_03805 at 859.890 kb on - strand, within PS417_03805 at 859.890 kb on - strand, within PS417_03805 at 859.890 kb on - strand, within PS417_03805 at 859.890 kb on - strand, within PS417_03805 at 860.061 kb on - strand at 860.099 kb on - strand, within PS417_03810 at 860.099 kb on - strand, within PS417_03810 at 860.239 kb on - strand at 860.348 kb on + strand at 860.349 kb on - strand at 860.349 kb on - strand at 860.349 kb on - strand at 860.433 kb on - strand at 860.433 kb on - strand at 860.552 kb on + strand, within PS417_03815 at 860.630 kb on + strand, within PS417_03815 at 860.631 kb on - strand, within PS417_03815 at 860.631 kb on - strand, within PS417_03815 at 860.631 kb on - strand, within PS417_03815 at 860.631 kb on - strand, within PS417_03815 at 861.572 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X remove 859,506 + PS417_03805 0.50 -1.1 859,506 + PS417_03805 0.50 -0.5 859,507 - PS417_03805 0.50 +0.9 859,507 - PS417_03805 0.50 +0.8 859,592 - PS417_03805 0.58 -0.9 859,592 - PS417_03805 0.58 -0.7 859,592 - PS417_03805 0.58 +0.0 859,889 + PS417_03805 0.84 -0.1 859,889 + PS417_03805 0.84 -0.3 859,890 - PS417_03805 0.84 -0.0 859,890 - PS417_03805 0.84 -1.0 859,890 - PS417_03805 0.84 -0.7 859,890 - PS417_03805 0.84 -0.0 859,890 - PS417_03805 0.84 -1.1 860,061 - -0.4 860,099 - PS417_03810 0.21 -0.4 860,099 - PS417_03810 0.21 +0.3 860,239 - +0.5 860,348 + -0.6 860,349 - +0.1 860,349 - +0.1 860,349 - -0.2 860,433 - +0.0 860,433 - -1.5 860,552 + PS417_03815 0.14 -1.5 860,630 + PS417_03815 0.22 -2.4 860,631 - PS417_03815 0.22 -0.0 860,631 - PS417_03815 0.22 -2.8 860,631 - PS417_03815 0.22 +0.1 860,631 - PS417_03815 0.22 -0.8 861,572 + -0.4
Or see this region's nucleotide sequence