Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03705 and PS417_03710 are separated by 101 nucleotides PS417_03710 and PS417_03715 are separated by 150 nucleotides
PS417_03705: PS417_03705 - 2-alkenal reductase, at 838,705 to 839,859
_03705
PS417_03710: PS417_03710 - metal-binding protein, at 839,961 to 840,719
_03710
PS417_03715: PS417_03715 - sulfate adenylyltransferase subunit 2, at 840,870 to 841,787
_03715
Position (kb) 839
840
841 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 839.510 kb on + strand, within PS417_03705 at 839.652 kb on - strand, within PS417_03705 at 839.713 kb on + strand, within PS417_03705 at 839.713 kb on + strand, within PS417_03705 at 839.713 kb on + strand, within PS417_03705 at 839.916 kb on - strand at 839.916 kb on - strand at 839.918 kb on - strand at 839.918 kb on - strand at 839.918 kb on - strand at 839.918 kb on - strand at 839.949 kb on + strand at 839.950 kb on - strand at 839.950 kb on - strand at 839.961 kb on - strand at 840.162 kb on + strand, within PS417_03710 at 840.507 kb on + strand, within PS417_03710 at 840.507 kb on + strand, within PS417_03710 at 840.508 kb on - strand, within PS417_03710 at 840.543 kb on + strand, within PS417_03710 at 840.543 kb on + strand, within PS417_03710 at 840.544 kb on - strand, within PS417_03710 at 840.643 kb on + strand, within PS417_03710 at 840.643 kb on + strand, within PS417_03710 at 840.643 kb on + strand, within PS417_03710 at 840.643 kb on + strand, within PS417_03710 at 840.644 kb on - strand at 840.758 kb on + strand at 840.758 kb on + strand at 840.773 kb on + strand at 840.807 kb on + strand at 840.807 kb on + strand at 840.808 kb on - strand at 840.808 kb on - strand at 840.845 kb on + strand at 840.845 kb on + strand at 840.845 kb on + strand at 840.845 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X remove 839,510 + PS417_03705 0.70 -0.7 839,652 - PS417_03705 0.82 -1.1 839,713 + PS417_03705 0.87 -1.9 839,713 + PS417_03705 0.87 -0.5 839,713 + PS417_03705 0.87 -1.0 839,916 - +1.3 839,916 - +0.4 839,918 - +0.3 839,918 - +0.6 839,918 - +0.7 839,918 - -0.4 839,949 + -0.9 839,950 - +0.0 839,950 - +0.1 839,961 - +0.9 840,162 + PS417_03710 0.26 +0.6 840,507 + PS417_03710 0.72 +0.3 840,507 + PS417_03710 0.72 +2.5 840,508 - PS417_03710 0.72 +1.5 840,543 + PS417_03710 0.77 +0.3 840,543 + PS417_03710 0.77 +0.7 840,544 - PS417_03710 0.77 -1.1 840,643 + PS417_03710 0.90 +0.1 840,643 + PS417_03710 0.90 -1.0 840,643 + PS417_03710 0.90 -0.2 840,643 + PS417_03710 0.90 +0.3 840,644 - -0.4 840,758 + -0.4 840,758 + -0.5 840,773 + -3.1 840,807 + -0.3 840,807 + -0.2 840,808 - -1.3 840,808 - -1.7 840,845 + -0.7 840,845 + -0.5 840,845 + +0.1 840,845 + -0.3
Or see this region's nucleotide sequence