Strain Fitness in Pseudomonas simiae WCS417 around PS417_00370

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00365 and PS417_00370 are separated by 98 nucleotidesPS417_00370 and PS417_00375 are separated by 37 nucleotidesPS417_00375 and PS417_00380 overlap by 8 nucleotides PS417_00365: PS417_00365 - hydroperoxidase, at 70,467 to 72,608 _00365 PS417_00370: PS417_00370 - hypothetical protein, at 72,707 to 73,426 _00370 PS417_00375: PS417_00375 - membrane protein, at 73,464 to 74,252 _00375 PS417_00380: PS417_00380 - zinc ABC transporter ATP-binding protein, at 74,245 to 75,030 _00380 Position (kb) 72 73 74Strain fitness (log2 ratio) -2 -1 0 1at 71.736 kb on + strand, within PS417_00365at 71.736 kb on + strand, within PS417_00365at 71.737 kb on - strandat 71.937 kb on + strand, within PS417_00365at 71.937 kb on + strand, within PS417_00365at 71.938 kb on - strand, within PS417_00365at 71.939 kb on + strand, within PS417_00365at 71.940 kb on - strand, within PS417_00365at 71.940 kb on - strand, within PS417_00365at 72.320 kb on + strand, within PS417_00365at 72.423 kb on + strandat 72.424 kb on - strandat 72.424 kb on - strandat 72.444 kb on - strandat 72.584 kb on + strandat 72.585 kb on - strandat 72.591 kb on - strandat 73.183 kb on - strand, within PS417_00370at 73.440 kb on + strandat 73.465 kb on + strandat 73.887 kb on - strand, within PS417_00375at 73.913 kb on - strand, within PS417_00375at 74.155 kb on + strand, within PS417_00375at 74.262 kb on + strandat 74.348 kb on + strand, within PS417_00380

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
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71,736 + PS417_00365 0.59 -1.0
71,736 + PS417_00365 0.59 -0.4
71,737 - -0.1
71,937 + PS417_00365 0.69 -2.3
71,937 + PS417_00365 0.69 -2.5
71,938 - PS417_00365 0.69 -0.2
71,939 + PS417_00365 0.69 -0.2
71,940 - PS417_00365 0.69 -0.4
71,940 - PS417_00365 0.69 +0.1
72,320 + PS417_00365 0.87 +0.4
72,423 + +0.5
72,424 - -1.0
72,424 - +1.5
72,444 - -0.8
72,584 + -0.5
72,585 - +0.1
72,591 - -0.2
73,183 - PS417_00370 0.66 -1.4
73,440 + -0.9
73,465 + -0.3
73,887 - PS417_00375 0.54 +1.2
73,913 - PS417_00375 0.57 +0.0
74,155 + PS417_00375 0.88 -0.3
74,262 + -0.3
74,348 + PS417_00380 0.13 -0.0

Or see this region's nucleotide sequence