Strain Fitness in Pseudomonas simiae WCS417 around PS417_03645

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03640 and PS417_03645 overlap by 14 nucleotidesPS417_03645 and PS417_03650 overlap by 4 nucleotides PS417_03640: PS417_03640 - cyclopropane-fatty-acyl-phospholipid synthase, at 825,073 to 826,344 _03640 PS417_03645: PS417_03645 - hypothetical protein, at 826,331 to 827,140 _03645 PS417_03650: PS417_03650 - FAD-dependent oxidoreductase, at 827,137 to 828,384 _03650 Position (kb) 826 827 828Strain fitness (log2 ratio) -2 -1 0 1at 825.390 kb on + strand, within PS417_03640at 825.391 kb on - strand, within PS417_03640at 825.392 kb on + strand, within PS417_03640at 825.393 kb on - strand, within PS417_03640at 825.702 kb on - strand, within PS417_03640at 825.861 kb on - strand, within PS417_03640at 825.861 kb on - strand, within PS417_03640at 825.911 kb on + strand, within PS417_03640at 825.911 kb on + strand, within PS417_03640at 825.911 kb on + strand, within PS417_03640at 825.911 kb on + strand, within PS417_03640at 826.024 kb on + strand, within PS417_03640at 826.024 kb on + strand, within PS417_03640at 826.024 kb on + strand, within PS417_03640at 826.025 kb on - strand, within PS417_03640at 826.198 kb on + strand, within PS417_03640at 826.243 kb on + strandat 826.243 kb on + strandat 826.244 kb on - strandat 826.244 kb on - strandat 826.244 kb on - strandat 826.244 kb on - strandat 826.449 kb on + strand, within PS417_03645at 826.449 kb on + strand, within PS417_03645at 826.449 kb on + strand, within PS417_03645at 826.450 kb on - strand, within PS417_03645at 826.450 kb on - strandat 826.497 kb on + strand, within PS417_03645at 826.498 kb on - strand, within PS417_03645at 826.629 kb on + strand, within PS417_03645at 826.729 kb on - strand, within PS417_03645at 826.729 kb on - strand, within PS417_03645at 826.806 kb on + strand, within PS417_03645at 826.807 kb on - strand, within PS417_03645at 826.826 kb on - strand, within PS417_03645at 826.882 kb on + strand, within PS417_03645at 826.883 kb on - strand, within PS417_03645at 826.883 kb on - strand, within PS417_03645at 826.959 kb on + strand, within PS417_03645at 827.225 kb on + strandat 827.226 kb on - strandat 827.248 kb on + strandat 827.291 kb on + strand, within PS417_03650at 827.291 kb on + strand, within PS417_03650at 827.292 kb on - strand, within PS417_03650at 827.292 kb on - strand, within PS417_03650at 827.306 kb on + strand, within PS417_03650at 827.306 kb on + strand, within PS417_03650at 827.306 kb on + strand, within PS417_03650at 827.307 kb on - strand, within PS417_03650at 827.307 kb on - strand, within PS417_03650at 827.411 kb on + strand, within PS417_03650at 827.412 kb on - strand, within PS417_03650at 827.412 kb on - strand, within PS417_03650at 827.412 kb on - strand, within PS417_03650at 827.412 kb on - strand, within PS417_03650at 827.412 kb on - strand, within PS417_03650at 827.744 kb on + strand, within PS417_03650at 827.744 kb on + strand, within PS417_03650at 827.745 kb on - strand, within PS417_03650at 827.745 kb on - strand, within PS417_03650at 827.745 kb on - strand, within PS417_03650at 827.745 kb on - strand, within PS417_03650at 827.745 kb on - strand, within PS417_03650at 827.900 kb on + strand, within PS417_03650at 827.901 kb on - strand, within PS417_03650at 827.901 kb on - strand, within PS417_03650

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
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825,390 + PS417_03640 0.25 -0.1
825,391 - PS417_03640 0.25 +0.1
825,392 + PS417_03640 0.25 +0.6
825,393 - PS417_03640 0.25 -0.2
825,702 - PS417_03640 0.49 -0.8
825,861 - PS417_03640 0.62 -0.2
825,861 - PS417_03640 0.62 -0.0
825,911 + PS417_03640 0.66 +0.2
825,911 + PS417_03640 0.66 -0.1
825,911 + PS417_03640 0.66 -0.1
825,911 + PS417_03640 0.66 +1.5
826,024 + PS417_03640 0.75 +0.2
826,024 + PS417_03640 0.75 +0.7
826,024 + PS417_03640 0.75 -0.1
826,025 - PS417_03640 0.75 -0.1
826,198 + PS417_03640 0.88 -0.2
826,243 + +0.0
826,243 + -0.5
826,244 - -2.3
826,244 - -0.5
826,244 - -0.7
826,244 - -0.4
826,449 + PS417_03645 0.15 -1.4
826,449 + PS417_03645 0.15 -0.1
826,449 + PS417_03645 0.15 -1.0
826,450 - PS417_03645 0.15 -1.3
826,450 - -0.5
826,497 + PS417_03645 0.20 +1.2
826,498 - PS417_03645 0.21 -1.4
826,629 + PS417_03645 0.37 -0.8
826,729 - PS417_03645 0.49 +0.3
826,729 - PS417_03645 0.49 -0.3
826,806 + PS417_03645 0.59 -1.6
826,807 - PS417_03645 0.59 -0.3
826,826 - PS417_03645 0.61 +1.3
826,882 + PS417_03645 0.68 +0.2
826,883 - PS417_03645 0.68 -0.5
826,883 - PS417_03645 0.68 -0.9
826,959 + PS417_03645 0.78 +0.4
827,225 + +0.1
827,226 - -0.5
827,248 + +0.0
827,291 + PS417_03650 0.12 +1.0
827,291 + PS417_03650 0.12 +0.3
827,292 - PS417_03650 0.12 -0.2
827,292 - PS417_03650 0.12 -0.5
827,306 + PS417_03650 0.14 -1.3
827,306 + PS417_03650 0.14 -0.6
827,306 + PS417_03650 0.14 -0.4
827,307 - PS417_03650 0.14 -0.1
827,307 - PS417_03650 0.14 +0.8
827,411 + PS417_03650 0.22 -0.5
827,412 - PS417_03650 0.22 -0.5
827,412 - PS417_03650 0.22 +0.4
827,412 - PS417_03650 0.22 +0.5
827,412 - PS417_03650 0.22 +0.4
827,412 - PS417_03650 0.22 -0.2
827,744 + PS417_03650 0.49 -0.4
827,744 + PS417_03650 0.49 -1.1
827,745 - PS417_03650 0.49 -1.2
827,745 - PS417_03650 0.49 -0.1
827,745 - PS417_03650 0.49 -0.8
827,745 - PS417_03650 0.49 -0.2
827,745 - PS417_03650 0.49 -0.2
827,900 + PS417_03650 0.61 -1.2
827,901 - PS417_03650 0.61 -0.4
827,901 - PS417_03650 0.61 +0.9

Or see this region's nucleotide sequence