Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02940 and PS417_02945 are separated by 82 nucleotides PS417_02945 and PS417_02950 overlap by 4 nucleotides PS417_02950 and PS417_02955 are separated by 185 nucleotides
PS417_02940: PS417_02940 - phosphoribosylaminoimidazolecarboxamide formyltransferase, at 672,256 to 673,863
_02940
PS417_02945: PS417_02945 - Fis family transcriptional regulator, at 673,946 to 674,266
_02945
PS417_02950: PS417_02950 - tRNA-dihydrouridine synthase B, at 674,263 to 675,276
_02950
PS417_02955: PS417_02955 - hypothetical protein, at 675,462 to 676,676
_02955
Position (kb) 674
675
676 Strain fitness (log2 ratio) -2
-1
0
1
2 at 674.441 kb on - strand, within PS417_02950 at 674.441 kb on - strand, within PS417_02950 at 674.460 kb on - strand, within PS417_02950 at 675.161 kb on - strand, within PS417_02950 at 675.185 kb on - strand at 675.245 kb on - strand at 675.250 kb on - strand at 675.250 kb on - strand at 675.250 kb on - strand at 675.250 kb on - strand at 675.250 kb on - strand at 675.250 kb on - strand at 675.250 kb on - strand at 675.277 kb on - strand at 675.277 kb on - strand at 675.307 kb on - strand at 675.491 kb on - strand at 675.503 kb on + strand at 675.533 kb on + strand at 675.534 kb on - strand at 675.691 kb on + strand, within PS417_02955 at 675.691 kb on + strand, within PS417_02955 at 675.691 kb on + strand, within PS417_02955 at 675.692 kb on - strand, within PS417_02955 at 675.692 kb on - strand, within PS417_02955 at 675.877 kb on + strand, within PS417_02955 at 675.878 kb on - strand, within PS417_02955
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X remove 674,441 - PS417_02950 0.18 -1.2 674,441 - PS417_02950 0.18 -1.6 674,460 - PS417_02950 0.19 -1.5 675,161 - PS417_02950 0.89 +0.2 675,185 - +0.1 675,245 - +0.0 675,250 - -1.7 675,250 - -1.0 675,250 - -0.9 675,250 - -0.9 675,250 - +1.0 675,250 - -0.4 675,250 - -0.6 675,277 - +0.3 675,277 - -1.0 675,307 - -0.3 675,491 - -2.6 675,503 + +2.1 675,533 + +0.0 675,534 - -0.1 675,691 + PS417_02955 0.19 +0.3 675,691 + PS417_02955 0.19 +0.3 675,691 + PS417_02955 0.19 -0.3 675,692 - PS417_02955 0.19 -0.7 675,692 - PS417_02955 0.19 +0.2 675,877 + PS417_02955 0.34 -0.2 675,878 - PS417_02955 0.34 +0.8
Or see this region's nucleotide sequence