Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02835 and PS417_02840 are separated by 320 nucleotides PS417_02840 and PS417_02845 are separated by 40 nucleotides
PS417_02835: PS417_02835 - branched-chain amino acid ABC transporter substrate-binding protein, at 642,062 to 643,327
_02835
PS417_02840: PS417_02840 - hypothetical protein, at 643,648 to 649,542
_02840
PS417_02845: PS417_02845 - ABC transporter permease, at 649,583 to 650,593
_02845
Position (kb) 643
644
645
646
647
648
649
650 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 642.717 kb on + strand, within PS417_02835 at 642.718 kb on - strand, within PS417_02835 at 642.718 kb on - strand, within PS417_02835 at 642.802 kb on - strand, within PS417_02835 at 642.858 kb on + strand, within PS417_02835 at 642.859 kb on - strand, within PS417_02835 at 642.903 kb on + strand, within PS417_02835 at 642.903 kb on + strand, within PS417_02835 at 642.903 kb on + strand, within PS417_02835 at 642.936 kb on + strand, within PS417_02835 at 642.948 kb on + strand, within PS417_02835 at 643.541 kb on + strand at 643.541 kb on + strand at 643.541 kb on + strand at 643.545 kb on + strand at 643.545 kb on + strand at 643.575 kb on + strand at 643.576 kb on - strand at 643.757 kb on + strand at 643.757 kb on + strand at 643.757 kb on + strand at 643.757 kb on + strand at 643.757 kb on + strand at 643.758 kb on - strand at 643.792 kb on + strand at 643.793 kb on - strand at 643.831 kb on + strand at 643.832 kb on - strand at 643.832 kb on - strand at 643.832 kb on - strand at 643.886 kb on + strand at 643.922 kb on + strand at 643.922 kb on + strand at 644.021 kb on + strand at 644.021 kb on + strand at 644.098 kb on + strand at 644.207 kb on - strand at 644.207 kb on - strand at 644.236 kb on + strand at 644.236 kb on + strand at 644.237 kb on - strand at 644.332 kb on + strand, within PS417_02840 at 644.333 kb on - strand, within PS417_02840 at 644.485 kb on + strand, within PS417_02840 at 644.485 kb on + strand, within PS417_02840 at 644.486 kb on - strand, within PS417_02840 at 644.581 kb on + strand, within PS417_02840 at 644.582 kb on - strand at 644.725 kb on + strand, within PS417_02840 at 644.726 kb on - strand, within PS417_02840 at 644.733 kb on + strand, within PS417_02840 at 645.109 kb on + strand, within PS417_02840 at 645.129 kb on - strand, within PS417_02840 at 645.226 kb on + strand, within PS417_02840 at 645.371 kb on - strand, within PS417_02840 at 645.404 kb on - strand, within PS417_02840 at 645.404 kb on - strand, within PS417_02840 at 645.404 kb on - strand, within PS417_02840 at 645.634 kb on - strand, within PS417_02840 at 645.641 kb on + strand, within PS417_02840 at 645.641 kb on + strand, within PS417_02840 at 645.642 kb on - strand, within PS417_02840 at 645.739 kb on + strand, within PS417_02840 at 645.740 kb on - strand, within PS417_02840 at 645.857 kb on - strand, within PS417_02840 at 646.007 kb on - strand, within PS417_02840 at 646.156 kb on + strand, within PS417_02840 at 646.316 kb on - strand, within PS417_02840 at 646.363 kb on + strand, within PS417_02840 at 646.401 kb on + strand, within PS417_02840 at 646.464 kb on - strand, within PS417_02840 at 646.489 kb on + strand, within PS417_02840 at 646.489 kb on + strand, within PS417_02840 at 646.489 kb on + strand, within PS417_02840 at 646.489 kb on + strand, within PS417_02840 at 646.489 kb on + strand at 646.602 kb on + strand, within PS417_02840 at 646.603 kb on - strand, within PS417_02840 at 646.648 kb on + strand, within PS417_02840 at 646.682 kb on - strand, within PS417_02840 at 646.937 kb on - strand, within PS417_02840 at 647.142 kb on + strand, within PS417_02840 at 647.142 kb on + strand, within PS417_02840 at 647.305 kb on + strand, within PS417_02840 at 647.305 kb on + strand, within PS417_02840 at 647.365 kb on + strand, within PS417_02840 at 647.365 kb on + strand, within PS417_02840 at 647.366 kb on - strand, within PS417_02840 at 647.366 kb on - strand, within PS417_02840 at 647.508 kb on - strand, within PS417_02840 at 647.534 kb on + strand, within PS417_02840 at 647.535 kb on - strand, within PS417_02840 at 647.661 kb on + strand, within PS417_02840 at 647.662 kb on - strand, within PS417_02840 at 647.849 kb on + strand, within PS417_02840 at 647.948 kb on - strand, within PS417_02840 at 648.208 kb on + strand, within PS417_02840 at 648.209 kb on - strand, within PS417_02840 at 648.209 kb on - strand, within PS417_02840 at 648.286 kb on + strand, within PS417_02840 at 648.287 kb on - strand, within PS417_02840 at 648.287 kb on - strand, within PS417_02840 at 648.287 kb on - strand, within PS417_02840 at 648.301 kb on + strand, within PS417_02840 at 648.302 kb on - strand, within PS417_02840 at 648.346 kb on + strand, within PS417_02840 at 648.347 kb on - strand, within PS417_02840 at 648.376 kb on + strand, within PS417_02840 at 648.376 kb on + strand, within PS417_02840 at 648.376 kb on + strand, within PS417_02840 at 648.376 kb on + strand, within PS417_02840 at 648.376 kb on + strand, within PS417_02840 at 648.376 kb on + strand, within PS417_02840 at 648.377 kb on - strand, within PS417_02840 at 648.377 kb on - strand, within PS417_02840 at 648.377 kb on - strand, within PS417_02840 at 648.580 kb on - strand, within PS417_02840 at 648.640 kb on + strand, within PS417_02840 at 648.641 kb on - strand, within PS417_02840 at 648.645 kb on - strand, within PS417_02840 at 648.645 kb on - strand, within PS417_02840 at 648.740 kb on - strand, within PS417_02840 at 648.742 kb on + strand at 648.742 kb on + strand, within PS417_02840 at 648.742 kb on + strand, within PS417_02840 at 648.743 kb on - strand, within PS417_02840 at 648.775 kb on + strand, within PS417_02840 at 648.776 kb on - strand at 648.776 kb on - strand, within PS417_02840 at 648.798 kb on - strand, within PS417_02840 at 648.964 kb on + strand at 648.964 kb on + strand at 648.964 kb on + strand at 648.964 kb on + strand at 648.991 kb on - strand at 648.993 kb on + strand at 648.994 kb on - strand at 648.994 kb on - strand at 649.050 kb on + strand at 649.103 kb on + strand at 649.104 kb on - strand at 649.234 kb on + strand at 649.234 kb on + strand at 649.235 kb on - strand at 649.235 kb on - strand at 649.239 kb on - strand at 649.312 kb on + strand at 649.607 kb on - strand at 650.182 kb on + strand at 650.417 kb on - strand, within PS417_02845 at 650.466 kb on + strand, within PS417_02845 at 650.466 kb on + strand, within PS417_02845 at 650.467 kb on - strand, within PS417_02845
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X remove 642,717 + PS417_02835 0.52 -0.7 642,718 - PS417_02835 0.52 +0.6 642,718 - PS417_02835 0.52 -0.5 642,802 - PS417_02835 0.58 +0.0 642,858 + PS417_02835 0.63 +0.1 642,859 - PS417_02835 0.63 -1.4 642,903 + PS417_02835 0.66 -0.7 642,903 + PS417_02835 0.66 +0.4 642,903 + PS417_02835 0.66 -0.6 642,936 + PS417_02835 0.69 +0.0 642,948 + PS417_02835 0.70 -0.2 643,541 + -0.4 643,541 + +0.1 643,541 + +0.9 643,545 + +0.7 643,545 + +0.0 643,575 + +1.1 643,576 - -0.8 643,757 + +0.1 643,757 + -0.6 643,757 + -0.4 643,757 + -2.0 643,757 + -0.2 643,758 - -0.2 643,792 + -0.1 643,793 - +1.4 643,831 + +1.0 643,832 - -0.3 643,832 - -2.5 643,832 - -0.1 643,886 + -0.0 643,922 + -1.9 643,922 + -1.4 644,021 + -0.5 644,021 + -0.2 644,098 + -1.3 644,207 - -0.6 644,207 - +0.2 644,236 + -1.0 644,236 + +1.0 644,237 - +0.3 644,332 + PS417_02840 0.12 -0.2 644,333 - PS417_02840 0.12 +0.1 644,485 + PS417_02840 0.14 +0.8 644,485 + PS417_02840 0.14 +0.2 644,486 - PS417_02840 0.14 -1.1 644,581 + PS417_02840 0.16 +0.6 644,582 - -1.0 644,725 + PS417_02840 0.18 +0.7 644,726 - PS417_02840 0.18 +0.1 644,733 + PS417_02840 0.18 +1.7 645,109 + PS417_02840 0.25 -0.7 645,129 - PS417_02840 0.25 -0.2 645,226 + PS417_02840 0.27 +0.3 645,371 - PS417_02840 0.29 -0.2 645,404 - PS417_02840 0.30 +0.4 645,404 - PS417_02840 0.30 -0.1 645,404 - PS417_02840 0.30 +0.1 645,634 - PS417_02840 0.34 +0.2 645,641 + PS417_02840 0.34 -0.2 645,641 + PS417_02840 0.34 +0.7 645,642 - PS417_02840 0.34 -0.3 645,739 + PS417_02840 0.35 +0.2 645,740 - PS417_02840 0.35 +0.7 645,857 - PS417_02840 0.37 -1.4 646,007 - PS417_02840 0.40 -0.7 646,156 + PS417_02840 0.43 +0.4 646,316 - PS417_02840 0.45 -0.0 646,363 + PS417_02840 0.46 -0.7 646,401 + PS417_02840 0.47 -0.0 646,464 - PS417_02840 0.48 -0.2 646,489 + PS417_02840 0.48 -0.1 646,489 + PS417_02840 0.48 -0.1 646,489 + PS417_02840 0.48 -0.7 646,489 + PS417_02840 0.48 +0.5 646,489 + -3.5 646,602 + PS417_02840 0.50 -0.8 646,603 - PS417_02840 0.50 -0.1 646,648 + PS417_02840 0.51 +0.3 646,682 - PS417_02840 0.51 -0.7 646,937 - PS417_02840 0.56 +0.2 647,142 + PS417_02840 0.59 -1.0 647,142 + PS417_02840 0.59 -0.7 647,305 + PS417_02840 0.62 +0.3 647,305 + PS417_02840 0.62 -0.2 647,365 + PS417_02840 0.63 -1.0 647,365 + PS417_02840 0.63 -1.6 647,366 - PS417_02840 0.63 -0.2 647,366 - PS417_02840 0.63 -0.6 647,508 - PS417_02840 0.65 -0.2 647,534 + PS417_02840 0.66 +0.6 647,535 - PS417_02840 0.66 +0.9 647,661 + PS417_02840 0.68 -0.8 647,662 - PS417_02840 0.68 +0.3 647,849 + PS417_02840 0.71 -0.4 647,948 - PS417_02840 0.73 +0.5 648,208 + PS417_02840 0.77 +0.1 648,209 - PS417_02840 0.77 -0.6 648,209 - PS417_02840 0.77 +0.1 648,286 + PS417_02840 0.79 -0.2 648,287 - PS417_02840 0.79 +1.1 648,287 - PS417_02840 0.79 -0.5 648,287 - PS417_02840 0.79 +1.5 648,301 + PS417_02840 0.79 +0.6 648,302 - PS417_02840 0.79 +0.9 648,346 + PS417_02840 0.80 -0.2 648,347 - PS417_02840 0.80 +0.1 648,376 + PS417_02840 0.80 -0.6 648,376 + PS417_02840 0.80 +1.2 648,376 + PS417_02840 0.80 -0.8 648,376 + PS417_02840 0.80 +1.5 648,376 + PS417_02840 0.80 +0.8 648,376 + PS417_02840 0.80 -0.4 648,377 - PS417_02840 0.80 +0.4 648,377 - PS417_02840 0.80 -0.4 648,377 - PS417_02840 0.80 +0.2 648,580 - PS417_02840 0.84 +0.9 648,640 + PS417_02840 0.85 +0.6 648,641 - PS417_02840 0.85 -0.1 648,645 - PS417_02840 0.85 +0.5 648,645 - PS417_02840 0.85 +0.5 648,740 - PS417_02840 0.86 +0.3 648,742 + +0.1 648,742 + PS417_02840 0.86 -2.8 648,742 + PS417_02840 0.86 -0.5 648,743 - PS417_02840 0.86 -1.2 648,775 + PS417_02840 0.87 -0.0 648,776 - +0.5 648,776 - PS417_02840 0.87 +0.1 648,798 - PS417_02840 0.87 -1.9 648,964 + +0.3 648,964 + +0.0 648,964 + +2.5 648,964 + -0.1 648,991 - +0.3 648,993 + +1.7 648,994 - +1.3 648,994 - +1.3 649,050 + +0.6 649,103 + -0.1 649,104 - -0.2 649,234 + -0.2 649,234 + -0.7 649,235 - +1.1 649,235 - -0.7 649,239 - -0.3 649,312 + -0.3 649,607 - +0.3 650,182 + -0.3 650,417 - PS417_02845 0.82 +0.4 650,466 + PS417_02845 0.87 -0.3 650,466 + PS417_02845 0.87 +1.2 650,467 - PS417_02845 0.87 -0.4
Or see this region's nucleotide sequence