Strain Fitness in Pseudomonas simiae WCS417 around PS417_27730

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
5,978,881	-		PS417_27720	0.53	-1.0
5,978,969	+		PS417_27720	0.60	-0.4
5,978,969	+		PS417_27720	0.60	+1.8
5,978,970	-		PS417_27720	0.60	+0.7
5,978,970	-		PS417_27720	0.60	-0.5
5,978,970	-		PS417_27720	0.60	+0.7
5,978,970	-		PS417_27720	0.60	-0.8
5,979,063	-		PS417_27720	0.67	-0.1
5,979,114	-		PS417_27720	0.71	+0.4
5,979,146	+		PS417_27720	0.74	+0.4
5,979,146	+		PS417_27720	0.74	-1.3
5,979,147	-		PS417_27720	0.74	+0.3
5,979,147	-		PS417_27720	0.74	-0.2
5,979,147	-		PS417_27720	0.74	-0.2
5,979,281	+		PS417_27720	0.84	-0.8
5,979,282	-		PS417_27720	0.84	-1.0
5,979,282	-		PS417_27720	0.84	-1.0
5,979,282	-		PS417_27720	0.84	-0.4
5,979,282	-		PS417_27720	0.84	-1.2
5,979,282	-		PS417_27720	0.84	+0.2
5,979,285	-		PS417_27720	0.84	+0.4
5,979,285	-				+0.7
5,979,285	-		PS417_27720	0.84	-0.6
5,979,285	-		PS417_27720	0.84	+0.0
5,979,285	-		PS417_27720	0.84	-0.0
5,979,682	-		PS417_27725	0.86	+1.6
5,979,803	+				-0.4
5,979,803	+				+0.1
5,979,803	+				+1.3
5,979,804	-				+0.3
5,979,807	+				-0.1
5,979,807	+				+0.3
5,979,808	-				-0.1
5,979,814	-				+0.3
5,979,820	+				-0.5
5,979,821	-				-1.5
5,979,821	-				+0.9
5,979,851	-				-0.6
5,979,851	-				-0.0
5,979,939	-				+0.9
5,979,967	-				-0.5
5,980,161	+		PS417_27730	0.20	-0.6
5,980,162	-		PS417_27730	0.20	-3.0
5,980,162	-		PS417_27730	0.20	-0.0
5,980,201	-		PS417_27730	0.22	-0.1
5,980,201	-		PS417_27730	0.22	-0.9
5,980,227	+		PS417_27730	0.24	-0.4
5,980,228	-		PS417_27730	0.24	+1.2
5,980,228	-		PS417_27730	0.24	-0.5
5,980,291	-		PS417_27730	0.29	+0.0
5,980,301	+		PS417_27730	0.29	-1.8
5,980,304	+		PS417_27730	0.30	-0.7
5,980,305	-		PS417_27730	0.30	-0.2
5,980,646	+		PS417_27730	0.54	-0.4
5,980,646	+		PS417_27730	0.54	-0.2
5,980,647	-		PS417_27730	0.54	-0.5
5,980,727	+		PS417_27730	0.59	-0.5
5,980,728	-		PS417_27730	0.59	-0.2
5,980,728	-		PS417_27730	0.59	-0.3
5,980,728	-		PS417_27730	0.59	-0.1
5,980,743	-		PS417_27730	0.60	-0.2
5,980,794	+		PS417_27730	0.64	-0.3
5,980,794	+		PS417_27730	0.64	+0.8
5,980,795	-		PS417_27730	0.64	+1.5
5,980,892	+		PS417_27730	0.71	-1.5
5,980,892	+		PS417_27730	0.71	-0.1
5,980,892	+		PS417_27730	0.71	-0.8
5,980,892	+		PS417_27730	0.71	-3.1
5,980,892	+		PS417_27730	0.71	-0.2
5,980,892	+		PS417_27730	0.71	-0.0
5,980,892	+		PS417_27730	0.71	-1.2
5,981,037	-		PS417_27730	0.81	-0.3
5,981,113	+		PS417_27730	0.86	+0.1
5,981,139	+		PS417_27730	0.88	-0.7
5,981,216	+				+0.3
5,981,216	+				-0.5
5,981,217	-				+0.1
5,981,382	-				-0.4
5,981,382	-				-0.1
5,981,386	-				-0.0
5,981,550	+				-0.3
5,981,551	-		PS417_27735	0.12	-0.7
5,981,551	-		PS417_27735	0.12	-1.4
5,981,620	+		PS417_27735	0.16	-0.1
5,981,620	+		PS417_27735	0.16	-0.7
5,981,620	+		PS417_27735	0.16	+1.2
5,981,620	+		PS417_27735	0.16	+0.0
5,981,620	+		PS417_27735	0.16	-0.1
5,981,621	-		PS417_27735	0.16	-1.7
5,981,621	-		PS417_27735	0.16	+0.2
5,981,621	-		PS417_27735	0.16	+1.8
5,981,621	-		PS417_27735	0.16	+0.2
5,981,644	-		PS417_27735	0.18	-1.5
5,981,644	-		PS417_27735	0.18	+0.4
5,981,938	+		PS417_27735	0.36	+0.3
5,981,939	-		PS417_27735	0.36	-0.3
5,981,939	-		PS417_27735	0.36	-0.4
5,982,018	+		PS417_27735	0.41	+1.1
5,982,018	+		PS417_27735	0.41	-0.0
5,982,019	-		PS417_27735	0.41	+0.0
5,982,079	-		PS417_27735	0.45	-0.7
5,982,079	-		PS417_27735	0.45	-0.5
5,982,181	+				+0.6
5,982,181	+		PS417_27735	0.52	+0.9
5,982,181	+		PS417_27735	0.52	-0.1
5,982,182	-		PS417_27735	0.52	-0.3