Strain Fitness in Pseudomonas simiae WCS417 around PS417_27430

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
5,917,711	+		PS417_27425	0.60	+1.5
5,917,711	+		PS417_27425	0.60	-0.0
5,917,712	-		PS417_27425	0.60	-1.8
5,917,712	-				+0.8
5,917,712	-		PS417_27425	0.60	-0.5
5,917,721	+		PS417_27425	0.61	+0.2
5,918,043	+		PS417_27425	0.82	+0.2
5,918,044	-		PS417_27425	0.82	-0.9
5,918,316	-				-0.1
5,918,327	+				-0.3
5,918,327	+				+0.0
5,918,327	+				-0.6
5,918,327	+				-0.2
5,918,327	+				-0.1
5,918,327	+				-0.2
5,918,328	-				+0.2
5,918,328	-				+0.6
5,918,328	-				+0.1
5,918,328	-				-0.9
5,918,328	-				+0.2
5,918,379	+				+0.2
5,918,396	-				-1.5
5,918,484	+				+1.0
5,918,499	+				+0.6
5,918,517	+				-0.5
5,918,637	-				-0.1
5,918,695	-				-1.6
5,918,695	-				-0.9
5,918,695	-				+0.9
5,918,988	+		PS417_27430	0.32	-0.0
5,919,001	-		PS417_27430	0.33	-0.9
5,919,068	+		PS417_27430	0.38	-0.2
5,919,068	+		PS417_27430	0.38	+0.9
5,919,069	-		PS417_27430	0.38	-1.2
5,919,069	-		PS417_27430	0.38	-1.0
5,919,069	-		PS417_27430	0.38	-0.4
5,919,102	-		PS417_27430	0.41	-1.0
5,919,267	-		PS417_27430	0.54	-1.0
5,919,312	+		PS417_27430	0.58	-1.5
5,919,329	-				-2.3
5,919,487	-		PS417_27430	0.72	-0.2
5,919,487	-		PS417_27430	0.72	+0.5
5,919,524	+		PS417_27430	0.75	-1.1
5,919,524	+		PS417_27430	0.75	+0.2
5,919,525	-		PS417_27430	0.75	-1.2
5,919,662	+		PS417_27430	0.86	-0.7
5,919,749	-				-0.4
5,919,813	+				-1.3
5,919,856	-				+0.6
5,919,878	+				-0.1
5,919,879	-				-0.1
5,919,955	+				-1.0
5,919,955	+				-1.4
5,920,009	+				-0.7
5,920,009	+				-0.6
5,920,009	+				+0.9
5,920,009	+				-0.9
5,920,009	+				-0.8
5,920,010	-				+0.9
5,920,010	-				-1.0
5,920,029	+				-0.6
5,920,029	+				+0.8
5,920,030	-				-1.4
5,920,249	-				+0.1
5,920,252	-				+0.6
5,920,629	-		PS417_27435	0.13	-0.4
5,920,770	-		PS417_27435	0.19	-1.6