Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26765 and PS417_26770 are separated by 144 nucleotides PS417_26770 and PS417_26775 are separated by 9 nucleotides PS417_26775 and PS417_26780 are separated by 52 nucleotides PS417_26780 and PS417_26785 are separated by 71 nucleotides PS417_26785 and PS417_26790 are separated by 74 nucleotides
PS417_26765: PS417_26765 - membrane protein, at 5,782,192 to 5,782,515
_26765
PS417_26770: PS417_26770 - tRNA (guanine-N7)-methyltransferase, at 5,782,660 to 5,783,385
_26770
PS417_26775: PS417_26775 - thiazole synthase, at 5,783,395 to 5,784,189
_26775
PS417_26780: PS417_26780 - thiamine biosynthesis protein ThiS, at 5,784,242 to 5,784,442
_26780
PS417_26785: PS417_26785 - membrane protein, at 5,784,514 to 5,784,891
_26785
PS417_26790: PS417_26790 - peptidoglycan transglycosylase, at 5,784,966 to 5,785,688
_26790
Position (kb) 5783
5784
5785 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5782.405 kb on + strand, within PS417_26765 at 5782.446 kb on + strand, within PS417_26765 at 5782.446 kb on + strand, within PS417_26765 at 5782.446 kb on + strand, within PS417_26765 at 5782.450 kb on + strand, within PS417_26765 at 5782.565 kb on - strand at 5782.565 kb on - strand at 5782.820 kb on + strand, within PS417_26770 at 5783.027 kb on + strand, within PS417_26770 at 5783.028 kb on - strand, within PS417_26770 at 5783.247 kb on - strand, within PS417_26770 at 5783.397 kb on - strand at 5783.397 kb on - strand at 5783.397 kb on - strand at 5783.397 kb on - strand at 5783.466 kb on - strand at 5783.466 kb on - strand at 5783.771 kb on + strand, within PS417_26775 at 5783.771 kb on + strand at 5783.772 kb on - strand, within PS417_26775 at 5783.942 kb on + strand, within PS417_26775 at 5783.973 kb on - strand, within PS417_26775 at 5784.107 kb on + strand, within PS417_26775 at 5784.141 kb on - strand at 5784.144 kb on + strand at 5784.144 kb on + strand at 5784.174 kb on + strand at 5784.633 kb on - strand, within PS417_26785 at 5784.705 kb on + strand, within PS417_26785 at 5784.705 kb on + strand, within PS417_26785 at 5784.706 kb on - strand, within PS417_26785 at 5784.706 kb on - strand, within PS417_26785 at 5784.706 kb on - strand, within PS417_26785 at 5784.706 kb on - strand, within PS417_26785 at 5784.759 kb on - strand, within PS417_26785 at 5784.927 kb on + strand at 5784.927 kb on + strand at 5784.927 kb on + strand at 5784.927 kb on + strand at 5784.927 kb on + strand at 5784.928 kb on - strand at 5784.928 kb on - strand at 5784.928 kb on - strand at 5784.928 kb on - strand at 5784.929 kb on + strand at 5784.930 kb on - strand at 5784.930 kb on - strand at 5784.965 kb on + strand at 5784.965 kb on + strand at 5785.082 kb on - strand, within PS417_26790
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X remove 5,782,405 + PS417_26765 0.66 -0.6 5,782,446 + PS417_26765 0.78 +0.7 5,782,446 + PS417_26765 0.78 -0.0 5,782,446 + PS417_26765 0.78 -0.0 5,782,450 + PS417_26765 0.80 +0.2 5,782,565 - +0.4 5,782,565 - -0.2 5,782,820 + PS417_26770 0.22 -0.1 5,783,027 + PS417_26770 0.51 +2.4 5,783,028 - PS417_26770 0.51 -0.6 5,783,247 - PS417_26770 0.81 -0.6 5,783,397 - +0.4 5,783,397 - +1.2 5,783,397 - +0.2 5,783,397 - +0.0 5,783,466 - -1.1 5,783,466 - -0.6 5,783,771 + PS417_26775 0.47 -0.6 5,783,771 + +0.9 5,783,772 - PS417_26775 0.47 +2.4 5,783,942 + PS417_26775 0.69 -1.0 5,783,973 - PS417_26775 0.73 -1.3 5,784,107 + PS417_26775 0.90 -0.6 5,784,141 - -0.5 5,784,144 + -0.1 5,784,144 + +0.6 5,784,174 + -2.6 5,784,633 - PS417_26785 0.31 +1.1 5,784,705 + PS417_26785 0.51 -1.5 5,784,705 + PS417_26785 0.51 +2.2 5,784,706 - PS417_26785 0.51 -0.4 5,784,706 - PS417_26785 0.51 -0.7 5,784,706 - PS417_26785 0.51 +0.4 5,784,706 - PS417_26785 0.51 -0.5 5,784,759 - PS417_26785 0.65 -0.4 5,784,927 + -0.5 5,784,927 + -0.2 5,784,927 + -0.2 5,784,927 + +1.0 5,784,927 + -0.5 5,784,928 - +0.3 5,784,928 - -0.1 5,784,928 - -0.8 5,784,928 - -0.3 5,784,929 + +0.2 5,784,930 - -0.1 5,784,930 - +0.4 5,784,965 + +2.4 5,784,965 + -0.4 5,785,082 - PS417_26790 0.16 +0.3
Or see this region's nucleotide sequence