Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24455 and PS417_24460 are separated by 178 nucleotides PS417_24460 and PS417_24465 are separated by 83 nucleotides PS417_24465 and PS417_24470 are separated by 0 nucleotides
PS417_24455: PS417_24455 - membrane protein, at 5,309,517 to 5,310,395
_24455
PS417_24460: PS417_24460 - hypothetical protein, at 5,310,574 to 5,310,990
_24460
PS417_24465: PS417_24465 - metallopeptidase, at 5,311,074 to 5,311,961
_24465
PS417_24470: PS417_24470 - hypothetical protein, at 5,311,962 to 5,312,933
_24470
Position (kb) 5310
5311 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5309.884 kb on + strand, within PS417_24455 at 5309.884 kb on + strand, within PS417_24455 at 5309.884 kb on + strand at 5309.884 kb on + strand, within PS417_24455 at 5310.100 kb on + strand, within PS417_24455 at 5310.101 kb on - strand, within PS417_24455 at 5310.157 kb on - strand, within PS417_24455 at 5310.290 kb on - strand, within PS417_24455 at 5310.440 kb on + strand at 5310.499 kb on + strand at 5310.573 kb on + strand at 5310.573 kb on + strand at 5310.573 kb on + strand at 5310.574 kb on - strand at 5310.574 kb on - strand at 5310.784 kb on + strand, within PS417_24460 at 5310.784 kb on + strand, within PS417_24460 at 5310.784 kb on + strand, within PS417_24460 at 5310.785 kb on - strand, within PS417_24460 at 5310.976 kb on + strand at 5310.988 kb on + strand at 5311.009 kb on - strand at 5311.015 kb on - strand at 5311.015 kb on - strand at 5311.015 kb on - strand at 5311.017 kb on + strand at 5311.018 kb on - strand at 5311.018 kb on - strand at 5311.018 kb on - strand at 5311.018 kb on - strand at 5311.078 kb on + strand at 5311.401 kb on + strand, within PS417_24465 at 5311.401 kb on + strand, within PS417_24465 at 5311.401 kb on + strand, within PS417_24465 at 5311.402 kb on - strand, within PS417_24465 at 5311.506 kb on + strand, within PS417_24465 at 5311.506 kb on + strand, within PS417_24465 at 5311.507 kb on - strand, within PS417_24465 at 5311.575 kb on + strand, within PS417_24465 at 5311.959 kb on + strand at 5311.960 kb on - strand at 5311.960 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X remove 5,309,884 + PS417_24455 0.42 +0.1 5,309,884 + PS417_24455 0.42 -0.8 5,309,884 + +0.3 5,309,884 + PS417_24455 0.42 -0.6 5,310,100 + PS417_24455 0.66 +0.4 5,310,101 - PS417_24455 0.66 +0.1 5,310,157 - PS417_24455 0.73 -0.4 5,310,290 - PS417_24455 0.88 -0.0 5,310,440 + -0.0 5,310,499 + -1.0 5,310,573 + -0.2 5,310,573 + -0.3 5,310,573 + +0.1 5,310,574 - +0.4 5,310,574 - +1.0 5,310,784 + PS417_24460 0.50 +0.1 5,310,784 + PS417_24460 0.50 -0.5 5,310,784 + PS417_24460 0.50 -1.2 5,310,785 - PS417_24460 0.51 -2.4 5,310,976 + +0.4 5,310,988 + +0.2 5,311,009 - -1.3 5,311,015 - -1.6 5,311,015 - -0.1 5,311,015 - -2.5 5,311,017 + -1.6 5,311,018 - -1.0 5,311,018 - -0.5 5,311,018 - +0.3 5,311,018 - -1.2 5,311,078 + -0.4 5,311,401 + PS417_24465 0.37 -1.2 5,311,401 + PS417_24465 0.37 +0.2 5,311,401 + PS417_24465 0.37 +0.1 5,311,402 - PS417_24465 0.37 +0.1 5,311,506 + PS417_24465 0.49 +2.6 5,311,506 + PS417_24465 0.49 +0.4 5,311,507 - PS417_24465 0.49 -0.5 5,311,575 + PS417_24465 0.56 +1.3 5,311,959 + +0.1 5,311,960 - -0.9 5,311,960 - +0.7
Or see this region's nucleotide sequence