Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00215 and PS417_00220 are separated by 235 nucleotides PS417_00220 and PS417_00225 are separated by 0 nucleotides PS417_00225 and PS417_00230 are separated by 142 nucleotides
PS417_00215: PS417_00215 - peroxiredoxin OsmC, at 43,276 to 43,707
_00215
PS417_00220: PS417_00220 - hypothetical protein, at 43,943 to 44,182
_00220
PS417_00225: PS417_00225 - hypothetical protein, at 44,183 to 44,605
_00225
PS417_00230: PS417_00230 - aminopeptidase, at 44,748 to 45,791
_00230
Position (kb) 44
45 Strain fitness (log2 ratio) -2
-1
0
1
2 at 43.276 kb on - strand at 43.281 kb on + strand at 43.281 kb on + strand at 43.338 kb on + strand, within PS417_00215 at 43.339 kb on - strand, within PS417_00215 at 43.339 kb on - strand, within PS417_00215 at 43.361 kb on + strand, within PS417_00215 at 43.362 kb on - strand, within PS417_00215 at 43.526 kb on + strand, within PS417_00215 at 43.526 kb on + strand, within PS417_00215 at 43.527 kb on - strand, within PS417_00215 at 43.665 kb on - strand at 43.700 kb on + strand at 43.700 kb on + strand at 43.701 kb on - strand at 43.716 kb on + strand at 43.717 kb on - strand at 43.841 kb on + strand at 43.841 kb on + strand at 43.841 kb on + strand at 43.841 kb on + strand at 43.841 kb on + strand at 43.842 kb on - strand at 43.845 kb on + strand at 43.846 kb on - strand at 43.852 kb on + strand at 43.885 kb on + strand at 43.885 kb on + strand at 43.885 kb on + strand at 43.885 kb on + strand at 43.886 kb on - strand at 43.886 kb on - strand at 43.887 kb on + strand at 43.892 kb on + strand at 43.893 kb on - strand at 43.893 kb on - strand at 43.902 kb on - strand at 43.977 kb on + strand, within PS417_00220 at 44.070 kb on - strand, within PS417_00220 at 44.246 kb on - strand, within PS417_00225 at 44.283 kb on + strand, within PS417_00225 at 44.283 kb on + strand, within PS417_00225 at 44.284 kb on - strand, within PS417_00225 at 44.337 kb on + strand, within PS417_00225 at 44.338 kb on - strand, within PS417_00225 at 44.631 kb on - strand at 44.631 kb on - strand at 44.631 kb on - strand at 44.631 kb on - strand at 44.664 kb on - strand at 44.669 kb on + strand at 44.669 kb on + strand at 44.670 kb on - strand at 44.670 kb on - strand at 44.670 kb on - strand at 44.670 kb on - strand at 44.671 kb on + strand at 44.671 kb on + strand at 44.671 kb on + strand at 44.672 kb on - strand at 44.672 kb on - strand at 44.672 kb on - strand at 44.672 kb on - strand at 44.672 kb on - strand at 44.811 kb on + strand at 44.812 kb on - strand at 44.812 kb on - strand at 44.991 kb on + strand, within PS417_00230 at 45.013 kb on - strand, within PS417_00230 at 45.108 kb on + strand, within PS417_00230 at 45.109 kb on - strand, within PS417_00230 at 45.109 kb on - strand, within PS417_00230 at 45.173 kb on - strand, within PS417_00230 at 45.189 kb on + strand, within PS417_00230 at 45.190 kb on - strand, within PS417_00230 at 45.297 kb on + strand, within PS417_00230 at 45.297 kb on + strand, within PS417_00230 at 45.298 kb on - strand, within PS417_00230 at 45.298 kb on - strand, within PS417_00230 at 45.395 kb on + strand, within PS417_00230 at 45.395 kb on + strand, within PS417_00230 at 45.586 kb on - strand, within PS417_00230
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X remove 43,276 - -0.1 43,281 + -2.0 43,281 + -0.2 43,338 + PS417_00215 0.14 -0.7 43,339 - PS417_00215 0.15 -0.1 43,339 - PS417_00215 0.15 -0.5 43,361 + PS417_00215 0.20 -0.0 43,362 - PS417_00215 0.20 -1.0 43,526 + PS417_00215 0.58 -0.4 43,526 + PS417_00215 0.58 -0.2 43,527 - PS417_00215 0.58 +1.0 43,665 - -0.3 43,700 + -0.3 43,700 + -1.5 43,701 - +0.4 43,716 + -0.8 43,717 - -0.3 43,841 + +0.1 43,841 + +2.7 43,841 + -0.4 43,841 + +1.9 43,841 + +0.3 43,842 - +0.2 43,845 + -0.1 43,846 - +0.3 43,852 + -1.0 43,885 + +1.5 43,885 + -0.5 43,885 + -1.6 43,885 + -0.1 43,886 - -0.9 43,886 - -0.5 43,887 + -0.7 43,892 + +1.0 43,893 - +0.5 43,893 - +0.4 43,902 - -0.1 43,977 + PS417_00220 0.14 -0.2 44,070 - PS417_00220 0.53 -1.5 44,246 - PS417_00225 0.15 -1.2 44,283 + PS417_00225 0.24 -1.9 44,283 + PS417_00225 0.24 -0.8 44,284 - PS417_00225 0.24 +0.0 44,337 + PS417_00225 0.36 -0.9 44,338 - PS417_00225 0.37 -1.5 44,631 - -0.6 44,631 - +0.3 44,631 - -0.4 44,631 - -0.1 44,664 - -0.8 44,669 + -0.1 44,669 + +0.3 44,670 - -0.7 44,670 - +0.3 44,670 - -1.5 44,670 - -1.0 44,671 + -0.8 44,671 + +0.6 44,671 + -1.2 44,672 - +0.6 44,672 - -0.5 44,672 - -0.7 44,672 - +0.4 44,672 - +0.2 44,811 + -0.2 44,812 - -0.1 44,812 - +0.1 44,991 + PS417_00230 0.23 -0.2 45,013 - PS417_00230 0.25 -0.8 45,108 + PS417_00230 0.34 +0.3 45,109 - PS417_00230 0.35 +0.9 45,109 - PS417_00230 0.35 -0.5 45,173 - PS417_00230 0.41 -0.2 45,189 + PS417_00230 0.42 -0.6 45,190 - PS417_00230 0.42 -0.4 45,297 + PS417_00230 0.53 -2.1 45,297 + PS417_00230 0.53 -0.9 45,298 - PS417_00230 0.53 -0.3 45,298 - PS417_00230 0.53 -0.2 45,395 + PS417_00230 0.62 -0.3 45,395 + PS417_00230 0.62 +0.5 45,586 - PS417_00230 0.80 -0.3
Or see this region's nucleotide sequence