Strain Fitness in Pseudomonas simiae WCS417 around PS417_13200
Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X |
|---|---|---|---|---|---|
| remove | |||||
| 2,886,354 | + | PS417_13195 | 0.85 | -1.5 | |
| 2,886,565 | - | -1.5 | |||
| 2,886,599 | + | +0.4 | |||
| 2,886,599 | + | -2.1 | |||
| 2,886,599 | + | -1.2 | |||
| 2,886,599 | + | -0.2 | |||
| 2,886,600 | - | -1.5 | |||
| 2,886,600 | - | -0.3 | |||
| 2,886,600 | - | -0.0 | |||
| 2,886,626 | + | -0.3 | |||
| 2,886,626 | + | +0.2 | |||
| 2,886,627 | - | -0.6 | |||
| 2,886,645 | + | +0.2 | |||
| 2,886,671 | - | -0.7 | |||
| 2,886,754 | - | +0.1 | |||
| 2,886,754 | - | -0.6 | |||
| 2,886,970 | + | +0.3 | |||
| 2,886,970 | + | -0.8 | |||
| 2,886,971 | - | -0.1 | |||
| 2,887,063 | + | +0.2 | |||
| 2,887,064 | - | -0.6 | |||
| 2,887,877 | - | PS417_13200 | 0.64 | -0.4 | |
| 2,888,412 | + | PS417_13205 | 0.17 | -0.2 | |
| 2,888,569 | - | PS417_13205 | 0.68 | -1.3 | |
| 2,888,569 | - | PS417_13205 | 0.68 | +1.7 |
Or see this region's nucleotide sequence