Strain Fitness in Pseudomonas simiae WCS417 around PS417_10540

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
2,247,419	+				+0.9
2,247,463	+				-0.1
2,247,463	+				-0.5
2,247,464	-				+0.5
2,247,465	+				+0.4
2,247,465	+				-0.1
2,247,465	+				-0.5
2,247,466	-				-0.9
2,247,496	-				-0.5
2,247,534	+				+0.4
2,247,534	+				+0.4
2,247,535	-				+0.3
2,247,539	-				-0.4
2,247,587	-		PS417_10535	0.18	+0.2
2,247,590	-		PS417_10535	0.19	-0.5
2,247,648	+		PS417_10535	0.37	-0.1
2,247,649	-		PS417_10535	0.37	+1.6
2,247,667	-		PS417_10535	0.42	-2.0
2,247,860	+				-0.0
2,247,886	-				-0.3
2,247,911	+				+0.2
2,247,911	+				+0.6
2,247,911	+				+0.8
2,247,911	+				-0.9
2,247,912	-				-0.4
2,247,912	-				-0.1
2,247,912	-				+0.2
2,247,912	-				-0.2
2,247,989	-				+0.0
2,248,159	-				-0.1
2,248,210	+				-0.2
2,248,210	+				-0.8
2,248,246	+				-0.0
2,248,247	-				-0.4
2,248,251	-				-1.0
2,248,251	-				-0.2
2,248,251	-				+1.5
2,248,377	+				-0.2
2,248,378	-				+1.1
2,248,398	-				+0.3
2,248,557	+		PS417_10540	0.18	-0.5
2,248,661	+				-0.8
2,248,662	-		PS417_10540	0.31	-0.6
2,249,082	+		PS417_10540	0.80	-0.5
2,249,082	+		PS417_10540	0.80	-1.1
2,249,227	+				-0.2
2,249,227	+				+0.2
2,249,227	+				-0.8
2,249,227	+				-0.3
2,249,228	-				-0.5
2,249,273	+				+0.9
2,249,274	-				+0.1
2,249,274	-				+0.7
2,249,274	-				-0.0
2,249,274	-				+2.1
2,249,274	-				-0.0
2,249,431	-		PS417_10545	0.39	-0.0
2,249,741	-				-0.5
2,249,751	-				+0.3
2,249,894	+				+1.0
2,249,894	+				+2.0