Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00930 and PS417_00935 are separated by 158 nucleotides PS417_00935 and PS417_00940 are separated by 13 nucleotides PS417_00940 and PS417_00945 are separated by 3 nucleotides
PS417_00930: PS417_00930 - ABC transporter permease, at 208,404 to 209,414
_00930
PS417_00935: PS417_00935 - sulfate ABC transporter permease, at 209,573 to 210,391
_00935
PS417_00940: PS417_00940 - sulfate ABC transporter permease, at 210,405 to 211,277
_00940
PS417_00945: PS417_00945 - sulfate ABC transporter ATP-binding protein, at 211,281 to 212,261
_00945
Position (kb) 210
211
212 Strain fitness (log2 ratio) -2
-1
0
1 at 209.490 kb on + strand at 209.491 kb on - strand at 209.572 kb on + strand at 209.572 kb on + strand at 209.573 kb on - strand at 209.624 kb on + strand at 209.636 kb on + strand at 209.652 kb on + strand at 209.679 kb on + strand, within PS417_00935 at 209.925 kb on - strand, within PS417_00935 at 209.981 kb on + strand, within PS417_00935 at 209.983 kb on + strand, within PS417_00935 at 210.203 kb on + strand, within PS417_00935 at 210.287 kb on + strand, within PS417_00935 at 210.288 kb on - strand, within PS417_00935 at 210.288 kb on - strand, within PS417_00935 at 210.288 kb on - strand, within PS417_00935 at 210.477 kb on - strand at 210.696 kb on + strand, within PS417_00940 at 210.697 kb on - strand, within PS417_00940 at 210.777 kb on + strand, within PS417_00940 at 210.777 kb on + strand, within PS417_00940 at 211.152 kb on + strand, within PS417_00940 at 211.153 kb on - strand, within PS417_00940 at 211.153 kb on - strand, within PS417_00940 at 211.153 kb on - strand, within PS417_00940 at 211.242 kb on - strand at 211.242 kb on - strand at 211.275 kb on + strand at 211.275 kb on + strand at 211.275 kb on + strand at 211.276 kb on - strand at 211.276 kb on - strand at 211.713 kb on - strand, within PS417_00945 at 211.713 kb on - strand, within PS417_00945 at 211.980 kb on + strand, within PS417_00945
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X remove 209,490 + +0.4 209,491 - +0.7 209,572 + +0.6 209,572 + +0.4 209,573 - -0.5 209,624 + -0.2 209,636 + +0.5 209,652 + -1.0 209,679 + PS417_00935 0.13 -0.6 209,925 - PS417_00935 0.43 -1.0 209,981 + PS417_00935 0.50 +0.6 209,983 + PS417_00935 0.50 +0.8 210,203 + PS417_00935 0.77 -0.5 210,287 + PS417_00935 0.87 -0.4 210,288 - PS417_00935 0.87 +0.2 210,288 - PS417_00935 0.87 +0.9 210,288 - PS417_00935 0.87 +0.5 210,477 - +1.6 210,696 + PS417_00940 0.33 -0.8 210,697 - PS417_00940 0.33 +0.1 210,777 + PS417_00940 0.43 -0.8 210,777 + PS417_00940 0.43 -0.1 211,152 + PS417_00940 0.86 -0.9 211,153 - PS417_00940 0.86 -1.5 211,153 - PS417_00940 0.86 -0.9 211,153 - PS417_00940 0.86 -1.4 211,242 - -0.1 211,242 - -0.0 211,275 + -1.1 211,275 + -0.5 211,275 + +0.9 211,276 - -0.5 211,276 - -2.0 211,713 - PS417_00945 0.44 +0.5 211,713 - PS417_00945 0.44 -0.3 211,980 + PS417_00945 0.71 -1.0
Or see this region's nucleotide sequence