Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00695 and PS417_00700 are separated by 33 nucleotides PS417_00700 and PS417_00705 are separated by 237 nucleotides PS417_00705 and PS417_00710 overlap by 4 nucleotides
PS417_00695: PS417_00695 - membrane protein, at 144,992 to 146,596
_00695
PS417_00700: PS417_00700 - hypothetical protein, at 146,630 to 146,875
_00700
PS417_00705: PS417_00705 - MarR family transcriptional regulator, at 147,113 to 147,523
_00705
PS417_00710: PS417_00710 - fusaric acid resistance protein, at 147,520 to 149,598
_00710
Position (kb) 147
148 Strain fitness (log2 ratio) -2
-1
0
1
2 at 146.267 kb on + strand, within PS417_00695 at 146.268 kb on - strand, within PS417_00695 at 146.276 kb on + strand, within PS417_00695 at 146.277 kb on - strand, within PS417_00695 at 146.277 kb on - strand, within PS417_00695 at 146.282 kb on + strand, within PS417_00695 at 146.285 kb on + strand, within PS417_00695 at 146.285 kb on + strand, within PS417_00695 at 146.315 kb on + strand, within PS417_00695 at 146.316 kb on - strand, within PS417_00695 at 146.316 kb on - strand, within PS417_00695 at 146.360 kb on + strand, within PS417_00695 at 146.360 kb on + strand, within PS417_00695 at 146.398 kb on + strand, within PS417_00695 at 146.398 kb on + strand, within PS417_00695 at 146.399 kb on - strand, within PS417_00695 at 146.399 kb on - strand, within PS417_00695 at 146.399 kb on - strand, within PS417_00695 at 146.402 kb on + strand, within PS417_00695 at 146.594 kb on + strand at 146.647 kb on + strand at 146.647 kb on + strand at 146.647 kb on + strand at 146.648 kb on - strand at 146.648 kb on - strand at 146.964 kb on - strand at 146.976 kb on - strand at 146.976 kb on - strand at 147.053 kb on + strand at 147.072 kb on - strand at 147.148 kb on + strand at 147.186 kb on - strand, within PS417_00705 at 147.329 kb on + strand, within PS417_00705 at 147.330 kb on - strand, within PS417_00705 at 147.565 kb on + strand at 147.566 kb on - strand at 147.566 kb on - strand at 147.604 kb on + strand at 147.604 kb on + strand at 147.605 kb on - strand at 147.605 kb on - strand at 147.658 kb on + strand at 147.658 kb on + strand at 147.658 kb on + strand at 147.658 kb on + strand at 147.659 kb on - strand at 147.659 kb on - strand at 147.659 kb on - strand at 147.659 kb on - strand at 147.659 kb on - strand at 147.706 kb on + strand at 147.707 kb on - strand at 147.778 kb on + strand, within PS417_00710 at 147.778 kb on + strand, within PS417_00710 at 147.779 kb on - strand, within PS417_00710 at 147.857 kb on - strand, within PS417_00710 at 147.857 kb on - strand, within PS417_00710 at 147.913 kb on - strand, within PS417_00710 at 148.206 kb on - strand, within PS417_00710 at 148.209 kb on + strand, within PS417_00710 at 148.210 kb on - strand, within PS417_00710 at 148.210 kb on - strand, within PS417_00710 at 148.212 kb on + strand, within PS417_00710 at 148.233 kb on + strand, within PS417_00710 at 148.234 kb on - strand, within PS417_00710 at 148.279 kb on + strand, within PS417_00710 at 148.279 kb on + strand, within PS417_00710 at 148.279 kb on + strand, within PS417_00710 at 148.279 kb on + strand, within PS417_00710 at 148.279 kb on + strand, within PS417_00710 at 148.280 kb on - strand, within PS417_00710 at 148.280 kb on - strand, within PS417_00710 at 148.280 kb on - strand, within PS417_00710
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X remove 146,267 + PS417_00695 0.79 +0.1 146,268 - PS417_00695 0.80 -0.1 146,276 + PS417_00695 0.80 -0.4 146,277 - PS417_00695 0.80 +0.5 146,277 - PS417_00695 0.80 -0.0 146,282 + PS417_00695 0.80 +0.1 146,285 + PS417_00695 0.81 +0.6 146,285 + PS417_00695 0.81 -2.0 146,315 + PS417_00695 0.82 +1.1 146,316 - PS417_00695 0.82 +0.2 146,316 - PS417_00695 0.82 -0.5 146,360 + PS417_00695 0.85 -1.0 146,360 + PS417_00695 0.85 -1.1 146,398 + PS417_00695 0.88 +0.1 146,398 + PS417_00695 0.88 -0.1 146,399 - PS417_00695 0.88 -0.7 146,399 - PS417_00695 0.88 -0.6 146,399 - PS417_00695 0.88 +0.2 146,402 + PS417_00695 0.88 -0.3 146,594 + -0.1 146,647 + +0.3 146,647 + +0.2 146,647 + +0.2 146,648 - -0.8 146,648 - +0.7 146,964 - +0.8 146,976 - -0.1 146,976 - -0.4 147,053 + -0.8 147,072 - +0.3 147,148 + +1.1 147,186 - PS417_00705 0.18 +1.1 147,329 + PS417_00705 0.53 +2.3 147,330 - PS417_00705 0.53 +0.5 147,565 + -0.3 147,566 - +0.1 147,566 - -0.2 147,604 + -0.1 147,604 + -0.4 147,605 - +1.5 147,605 - -0.6 147,658 + -1.1 147,658 + +1.5 147,658 + +0.0 147,658 + -0.3 147,659 - +0.3 147,659 - -0.4 147,659 - +0.8 147,659 - -1.5 147,659 - -0.6 147,706 + -1.2 147,707 - -1.0 147,778 + PS417_00710 0.12 +0.2 147,778 + PS417_00710 0.12 +1.6 147,779 - PS417_00710 0.12 -1.5 147,857 - PS417_00710 0.16 +0.3 147,857 - PS417_00710 0.16 +0.0 147,913 - PS417_00710 0.19 +0.3 148,206 - PS417_00710 0.33 +0.0 148,209 + PS417_00710 0.33 +0.6 148,210 - PS417_00710 0.33 +0.6 148,210 - PS417_00710 0.33 -1.1 148,212 + PS417_00710 0.33 -0.5 148,233 + PS417_00710 0.34 +0.3 148,234 - PS417_00710 0.34 -0.2 148,279 + PS417_00710 0.37 +2.0 148,279 + PS417_00710 0.37 -1.9 148,279 + PS417_00710 0.37 +1.0 148,279 + PS417_00710 0.37 -0.0 148,279 + PS417_00710 0.37 +0.0 148,280 - PS417_00710 0.37 +0.0 148,280 - PS417_00710 0.37 -0.4 148,280 - PS417_00710 0.37 +0.3
Or see this region's nucleotide sequence