Strain Fitness in Pseudomonas simiae WCS417 around PS417_00555

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
109,237	-		PS417_00545	0.87	+2.0
109,239	-		PS417_00545	0.88	+0.1
109,239	-		PS417_00545	0.88	-0.1
109,324	+				-0.1
109,324	+				+0.4
109,324	+				+0.6
109,325	-				-0.5
109,349	+				-0.2
109,372	+				+0.1
109,373	-				-1.0
109,693	-		PS417_00550	0.78	-0.6
109,730	+				-0.2
109,731	-				-1.1
109,768	+				-0.1
109,773	-				+0.1
109,773	-				+1.4
109,781	-				-0.6
109,823	+				-0.2
109,823	+				+0.1
109,861	+				+0.3
109,863	+				+0.3
109,872	+				-0.5
109,873	-				+0.3
109,942	+				-0.2
109,942	+				-0.4
109,943	-				+0.1
109,943	-				-0.4
109,943	-				+0.0
109,943	-				+2.3
109,943	-				-0.6
109,943	-				-0.3
109,943	-				+0.4
109,943	-				+1.2
109,943	-				+0.9
109,943	-				+0.2
110,051	+				+0.0
110,052	-				-0.4
110,052	-				-0.3
110,163	+				+0.2
110,203	+				-0.9
110,204	-				+0.1
110,204	-				-0.5
110,322	-		PS417_00555	0.18	-0.3
110,463	+		PS417_00555	0.27	-0.3
110,463	+		PS417_00555	0.27	-0.6
110,464	-		PS417_00555	0.27	-1.4
110,464	-		PS417_00555	0.27	-0.1
110,500	+		PS417_00555	0.30	+0.3
110,501	-		PS417_00555	0.30	+0.6
110,501	-		PS417_00555	0.30	-1.2
110,504	+		PS417_00555	0.30	-1.0
110,505	-		PS417_00555	0.30	-0.1
110,568	+		PS417_00555	0.34	-0.1
110,568	+		PS417_00555	0.34	-0.5
110,568	+		PS417_00555	0.34	-0.5
110,569	-		PS417_00555	0.34	+1.2
110,569	-		PS417_00555	0.34	+0.1
110,694	+		PS417_00555	0.43	-0.8
110,695	-		PS417_00555	0.43	-0.6
111,015	+		PS417_00555	0.64	-0.1
111,015	+		PS417_00555	0.64	+0.5
111,015	+		PS417_00555	0.64	-1.8
111,015	+		PS417_00555	0.64	+0.3
111,015	+		PS417_00555	0.64	-1.5
111,015	+		PS417_00555	0.64	-0.3
111,015	+		PS417_00555	0.64	-1.7
111,016	-		PS417_00555	0.64	-1.5
111,016	-		PS417_00555	0.64	+4.5
111,016	-		PS417_00555	0.64	-1.1
111,110	+		PS417_00555	0.70	+0.1
111,125	+		PS417_00555	0.71	-0.7
111,308	+		PS417_00555	0.84	+0.1
111,335	+		PS417_00555	0.86	-0.2
111,336	-		PS417_00555	0.86	-0.0
111,546	+				+1.3
111,547	-				+0.1
111,558	+				-1.8
111,558	+				-0.3
111,618	-				-0.3
111,759	+				+0.1
111,759	+				+0.8
111,803	+				+1.5
111,804	-				+0.4
111,804	-				+0.5
112,097	+		PS417_00560	0.26	-0.4
112,225	-		PS417_00560	0.34	-1.0
112,318	+		PS417_00560	0.41	+0.0
112,318	+		PS417_00560	0.41	+0.5
112,318	+		PS417_00560	0.41	-0.3
112,318	+		PS417_00560	0.41	+0.5
112,319	-		PS417_00560	0.41	-0.1
112,319	-		PS417_00560	0.41	+0.9
112,323	+		PS417_00560	0.41	-0.9
112,328	+		PS417_00560	0.42	+1.8
112,359	-		PS417_00560	0.44	-0.2
112,359	-		PS417_00560	0.44	+0.3
112,359	-		PS417_00560	0.44	-0.9
112,385	-		PS417_00560	0.46	+1.9
112,457	+		PS417_00560	0.51	+0.7
112,457	+		PS417_00560	0.51	-0.7
112,457	+		PS417_00560	0.51	-0.7
112,457	+		PS417_00560	0.51	+0.1