Strain Fitness in Pseudomonas simiae WCS417 around PS417_05445

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X
1,223,020	+		PS417_05440	0.41	-0.9
1,223,021	-		PS417_05440	0.41	-0.1
1,223,021	-		PS417_05440	0.41	-1.0
1,223,021	-		PS417_05440	0.41	-0.1
1,223,021	-		PS417_05440	0.41	-0.7
1,223,021	-		PS417_05440	0.41	+0.1
1,223,116	+		PS417_05440	0.48	+0.2
1,223,117	-				-0.7
1,223,233	-		PS417_05440	0.57	+0.1
1,223,497	+		PS417_05440	0.77	-0.2
1,223,498	-		PS417_05440	0.77	-0.1
1,223,498	-		PS417_05440	0.77	+0.3
1,223,498	-		PS417_05440	0.77	+0.2
1,223,525	-		PS417_05440	0.79	+1.2
1,223,758	+				-1.1
1,223,759	-				+0.0
1,223,759	-				-1.0
1,223,765	+				+0.0
1,223,765	+				+0.1
1,223,765	+				+0.1
1,223,765	+				-0.0
1,223,765	+				-0.6
1,223,766	-				+0.4
1,223,766	-				-0.2
1,223,766	-				-0.4
1,223,769	+				+0.9
1,223,769	+				+1.0
1,223,833	+				-0.1
1,223,833	+				+0.5
1,224,035	-		PS417_05445	0.48	+0.5
1,224,456	+		PS417_05450	0.42	+0.1
1,224,504	+				+1.4
1,224,505	-		PS417_05450	0.51	+0.3
1,224,505	-		PS417_05450	0.51	+0.8
1,224,505	-		PS417_05450	0.51	-0.2
1,224,505	-		PS417_05450	0.51	-0.6
1,224,505	-		PS417_05450	0.51	-0.1
1,224,505	-		PS417_05450	0.51	-0.9
1,224,520	-		PS417_05450	0.54	+1.8
1,224,642	+		PS417_05450	0.78	+0.2
1,224,642	+		PS417_05450	0.78	+0.0
1,224,643	-		PS417_05450	0.78	-0.3
1,224,705	+				-0.2
1,224,825	+				-0.2
1,224,825	+				+0.8
1,224,826	-				-2.3
1,224,826	-				-2.1
1,224,861	+		PS417_05455	0.12	-2.7
1,224,861	+		PS417_05455	0.12	-2.5
1,224,862	-		PS417_05455	0.12	-0.7
1,225,009	+		PS417_05455	0.28	-2.8
1,225,010	-		PS417_05455	0.28	-1.5
1,225,010	-		PS417_05455	0.28	-1.2
1,225,128	+		PS417_05455	0.41	-1.6
1,225,129	-		PS417_05455	0.41	-1.6
1,225,136	-		PS417_05455	0.42	-1.0
1,225,180	-		PS417_05455	0.47	+0.8
1,225,197	+		PS417_05455	0.48	-1.5
1,225,198	-		PS417_05455	0.49	-0.9
1,225,198	-		PS417_05455	0.49	-0.7